Curated BLAST for Genomes

 

Curated BLAST

Searching in Tistlia consotensis USBA 355 (GCF_900177295.1)

Found 35 curated entries in PaperBLAST's database that match '5.3.1.8' as complete word(s).

These curated entries have 29 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Tistlia consotensis USBA 355, or try another query

B9O00_RS22145 SAMN05428998_12278 WP_085124919.1: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase
is similar to:
PaperBLAST

ALGA_PSEAE / P07874: Alginate biosynthesis protein AlgA; EC 5.3.1.8; EC 2.7.7.13 from Pseudomonas aeruginosa
algA / P07874: phosphomannose isomerase (EC 5.3.1.8; EC 2.7.7.13) from Pseudomonas aeruginosa

51% id,
97% cov

algA / GI|31296823: alginate biosynthesis protein AlgA; EC 2.7.7.13; EC 5.3.1.8 from Pseudomonas fluorescens

50% id,
97% cov

PH0925 / O58649: GDP-D-mannose pyrophosphorylase (EC 2.7.7.13; EC 5.3.1.8) from Pyrococcus horikoshii

41% id,
99% cov

B9O00_RS04385 SAMN05428998_102152 WP_085121227.1: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase
is similar to:
PaperBLAST

ALGA_PSEAE / P07874: Alginate biosynthesis protein AlgA; EC 5.3.1.8; EC 2.7.7.13 from Pseudomonas aeruginosa
algA / P07874: phosphomannose isomerase (EC 5.3.1.8; EC 2.7.7.13) from Pseudomonas aeruginosa

48% id,
97% cov

algA / GI|31296823: alginate biosynthesis protein AlgA; EC 2.7.7.13; EC 5.3.1.8 from Pseudomonas fluorescens

48% id,
97% cov

PH0925 / O58649: GDP-D-mannose pyrophosphorylase (EC 2.7.7.13; EC 5.3.1.8) from Pyrococcus horikoshii

40% id,
99% cov

glmM B9O00_RS14620 SAMN05428998_11151 WP_085123430.1: phosphoglucosamine mutase
is similar to:
PaperBLAST

ST0242 / Q976E4: hexose-6-phosphate mutase/isomerase (EC 5.3.1.8; EC 5.3.1.9; EC 5.4.2.10; EC 5.4.2.13) from Sulfurisphaera tokodaii

28% id,
99% cov

B9O00_RS00155 SAMN05428998_10132 WP_085120408.1: phosphomannomutase/phosphoglucomutase
is similar to:
PaperBLAST

ST0242 / Q976E4: hexose-6-phosphate mutase/isomerase (EC 5.3.1.8; EC 5.3.1.9; EC 5.4.2.10; EC 5.4.2.13) from Sulfurisphaera tokodaii

28% id,
94% cov

B9O00_RS13840 SAMN05428998_11056 WP_085123280.1: alpha-D-glucose phosphate-specific phosphoglucomutase
is similar to:
PaperBLAST

ST0242 / Q976E4: hexose-6-phosphate mutase/isomerase (EC 5.3.1.8; EC 5.3.1.9; EC 5.4.2.10; EC 5.4.2.13) from Sulfurisphaera tokodaii

23% id,
78% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory