Curated BLAST for Genomes

 

Curated BLAST

Searching in Allosphingosinicella indica Dd16 (GCF_900177405.1)

Found 39 curated entries in PaperBLAST's database that match '1.1.1.3' as complete word(s).

These curated entries have 30 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Allosphingosinicella indica Dd16, or try another query

B9N75_RS02885 SAMN06295910_0587 WP_085217441.1: homoserine dehydrogenase
is similar to:
PaperBLAST

Ga0059261_2711: homoserine dehydrogenase (EC 1.1.1.3) from Sphingomonas koreensis

39% id,
79% cov

Q5SL04: homoserine dehydrogenase (EC 1.1.1.3) from Thermus thermophilus

34% id,
90% cov

Q56R01: homoserine dehydrogenase (EC 1.1.1.3) from Streptomyces clavuligerus

38% id,
75% cov

More...

B9N75_RS10910 SAMN06295910_2219 WP_085218826.1: aspartate kinase
is similar to:
PaperBLAST

Q9WZ17: homoserine dehydrogenase (EC 1.1.1.3); aspartate kinase (EC 2.7.2.4) from Thermotoga maritima

37% id,
54% cov

CA265_RS23475: aspartate kinase; homoserine dehydrogenase (EC 2.7.2.4; EC 1.1.1.3) from Pedobacter sp.

29% id,
49% cov

Echvi_2000: aspartate kinase / homoserine dehydrogenase (EC 2.7.2.4; EC 1.1.1.3) from Echinicola vietnamensis

29% id,
46% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory