Curated BLAST for Genomes

 

Curated BLAST

Searching in Allosphingosinicella indica Dd16 (GCF_900177405.1)

Found 52 curated entries in PaperBLAST's database that match '3.1.3.3' as complete word(s).

These curated entries have 39 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Allosphingosinicella indica Dd16, or try another query

serB B9N75_RS13275 SAMN06295910_2695 WP_085219702.1: phosphoserine phosphatase SerB
is similar to:
PaperBLAST

SERB_STRT2 / Q5M3B3: Phosphoserine phosphatase; PSP; PSPase; O-phosphoserine phosphohydrolase; EC 3.1.3.3 from Streptococcus thermophilus

48% id,
93% cov

SERB_LACLA / Q9CHW3: Phosphoserine phosphatase; PSP; PSPase; O-phosphoserine phosphohydrolase; EC 3.1.3.3 from Lactococcus lactis

45% id,
94% cov

SERB_ALBFT / Q21YU0: Phosphoserine phosphatase; PSP; PSPase; O-phosphoserine phosphohydrolase; EC 3.1.3.3 from Albidiferax ferrireducens

42% id,
99% cov

More...

gpmA B9N75_RS07190 SAMN06295910_1458 WP_085218187.1: 2,3-diphosphoglycerate-dependent phosphoglycerate mutase
is similar to:
PaperBLAST

ABIE51_RS06160: phosphoserine phosphatase (EC 3.1.3.3) from Lysobacter sp.

29% id,
78% cov

SERCL_ARATH / F4KI56: Metal-independent phosphoserine phosphatase; iPSP; Phosphoglycerate mutase-like protein 3; EC 3.1.3.3 from Arabidopsis thaliana

29% id,
71% cov

PSPA_HYDTT / D3DFG8: Phosphoserine phosphatase 1; PSP 1; PSPase 1; Metal-independent phosphoserine phosphatase 1; iPSP1; O-phosphoserine phosphohydrolase 1; EC 3.1.3.3 from Hydrogenobacter thermophilus
D3DFG8: phosphoserine phosphatase (EC 3.1.3.3) from Hydrogenobacter thermophilus

27% id,
74% cov

serA B9N75_RS08140 SAMN06295910_1653 WP_085218338.1: phosphoglycerate dehydrogenase
is similar to:
PaperBLAST

Echvi_2777: fused D-3-phosphoglycerate dehydrogenase / phosphoserine phosphatase (EC 1.1.1.95; EC 3.1.3.3) from Echinicola vietnamensis

34% id,
60% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

1646729-1648744 (frame +2) on NZ_LT840185.1 Allosphingosinicella indica strain Dd16 chromosome I
is similar to:
PaperBLAST

Echvi_2777: fused D-3-phosphoglycerate dehydrogenase / phosphoserine phosphatase (EC 1.1.1.95; EC 3.1.3.3) from Echinicola vietnamensis
Also see hits to annotated proteins above

34% id,
64% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory