Curated BLAST for Genomes

 

Curated BLAST

Searching in Allosphingosinicella indica Dd16 (GCF_900177405.1)

Found 13 curated entries in PaperBLAST's database that match '5.1.1.4' as complete word(s).

These curated entries have 9 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Allosphingosinicella indica Dd16, or try another query

B9N75_RS00310 SAMN06295910_0065 WP_085216990.1: 4-hydroxyproline epimerase
is similar to:
PaperBLAST

PRAC_CLODI / A8DEZ8: Proline racemase; CdPRAC; EC 5.1.1.4 from Clostridioides difficile
Q17ZY4: proline racemase (EC 5.1.1.4) from Clostridioides difficile
A8DEZ8: proline racemase (EC 5.1.1.4) from Clostridioides difficile

41% id,
97% cov

PRAC_ACESD / E3PTZ4: Proline racemase; PR; AsProR; CsPR; EC 5.1.1.4 from Acetoanaerobium sticklandii

37% id,
98% cov

H3ZMH5: proline racemase (EC 5.1.1.4); 4-hydroxyproline epimerase (EC 5.1.1.8) from Thermococcus litoralis

37% id,
98% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory