Curated BLAST for Genomes

 

Curated BLAST

Searching in Allosphingosinicella indica Dd16 (GCF_900177405.1)

Found 26 curated entries in PaperBLAST's database that match 'argininosuccinate lyase' as complete word(s).

These curated entries have 23 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Allosphingosinicella indica Dd16, or try another query

argH B9N75_RS06120 SAMN06295910_1241 WP_085218001.1: argininosuccinate lyase
is similar to:
PaperBLAST

argH / BAC65282.1: argininosuccinate lyase from Burkholderia multivorans

53% id,
97% cov

2e9fB / Q5SLL0: Crystal structure of t.Th.Hb8 argininosuccinate lyase complexed with l-arginine

50% id,
99% cov

ARLY_SYNY3 / P73257: Argininosuccinate lyase; ASAL; Arginosuccinase; SyArgH; EC 4.3.2.1 from Synechocystis sp.

48% id,
99% cov

More...

purB B9N75_RS12450 SAMN06295910_2527 WP_085219084.1: adenylosuccinate lyase
is similar to:
PaperBLAST

Q8DVX5: argininosuccinate lyase (EC 4.3.2.1) from Streptococcus mutans

23% id,
70% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

1240309-1242090 (frame +1) on NZ_LT840185.1 Allosphingosinicella indica strain Dd16 chromosome I
is similar to:
PaperBLAST

argH / BAC65282.1: argininosuccinate lyase from Burkholderia multivorans
Also see hits to annotated proteins above

52% id,
100% cov

Q9P870: argininosuccinate lyase (EC 4.3.2.1) from Agaricus bisporus
Also see hits to annotated proteins above

43% id,
99% cov

ARLY_YEAST / P04076: Argininosuccinate lyase; ASAL; Arginosuccinase; EC 4.3.2.1 from Saccharomyces cerevisiae
Also see hits to annotated proteins above

42% id,
100% cov

More...

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory