Curated BLAST for Genomes

 

Curated BLAST

Searching in Allosphingosinicella indica Dd16 (GCF_900177405.1)

Found 4 curated entries in PaperBLAST's database that match 'glutamyl-tRNA(Gln) amidotransferase subunit B' as complete word(s).

These curated entries have 4 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Allosphingosinicella indica Dd16, or try another query

gatB B9N75_RS13215 SAMN06295910_2683 WP_085219214.1: Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB
is similar to:
PaperBLAST

GATB_ARATH / Q9FV81: Glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial; Glu-AdT subunit B; EC 6.3.5.- from Arabidopsis thaliana

42% id,
87% cov

GATB_HUMAN / O75879: Glutamyl-tRNA(Gln) amidotransferase subunit B, mitochondrial; Glu-AdT subunit B; Cytochrome c oxidase assembly factor PET112 homolog; EC 6.3.5.- from Homo sapiens

41% id,
89% cov

GATB_SCHPO / Q9UT77: Glutamyl-tRNA(Gln) amidotransferase subunit B, mitochondrial; Glu-AdT subunit B; EC 6.3.5.- from Schizosaccharomyces pombe

31% id,
97% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

2670832-2672493 (frame -2) on NZ_LT840185.1 Allosphingosinicella indica strain Dd16 chromosome I
is similar to:
PaperBLAST

GATB_ARATH / Q9FV81: Glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial; Glu-AdT subunit B; EC 6.3.5.- from Arabidopsis thaliana
Also see hits to annotated proteins above

39% id,
96% cov

GATB_HUMAN / O75879: Glutamyl-tRNA(Gln) amidotransferase subunit B, mitochondrial; Glu-AdT subunit B; Cytochrome c oxidase assembly factor PET112 homolog; EC 6.3.5.- from Homo sapiens
Also see hits to annotated proteins above

38% id,
98% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory