Curated BLAST for Genomes

 

Curated BLAST

Searching in Dethiosulfovibrio salsuginis USBA 82 (GCF_900177735.1)

Found 10 curated entries in PaperBLAST's database that match '1.1.1.46' as complete word(s).

These curated entries have 10 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Dethiosulfovibrio salsuginis USBA 82, or try another query

fabG B9Y55_RS01195 SAMN06275492_101241 WP_085543521.1: 3-oxoacyl-[acyl-carrier-protein] reductase
is similar to:
PaperBLAST

Pf1N1B4_412: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

35% id,
92% cov

PfGW456L13_2119: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

35% id,
92% cov

Pf6N2E2_5967: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

34% id,
92% cov

More...

B9Y55_RS05390 SAMN06275492_11058 WP_085544348.1: SDR family oxidoreductase
is similar to:
PaperBLAST

Pf1N1B4_412: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

35% id,
91% cov

Pf6N2E2_5967: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

35% id,
91% cov

PfGW456L13_2119: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

34% id,
91% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory