Curated BLAST for Genomes

 

Curated BLAST

Searching in Dethiosulfovibrio salsuginis USBA 82 (GCF_900177735.1)

Found 36 curated entries in PaperBLAST's database that match '2.3.3.9' as complete word(s).

These curated entries have 22 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Dethiosulfovibrio salsuginis USBA 82, or try another query

B9Y55_RS07245 SAMN06275492_11637 WP_085544699.1: aldolase/citrate lyase family protein
is similar to:
PaperBLAST

CLYBL_HUMAN / Q8N0X4: Citramalyl-CoA lyase, mitochondrial; (3S)-malyl-CoA thioesterase; Beta-methylmalate synthase; Citrate lyase subunit beta-like protein; Citrate lyase beta-like; Malate synthase; EC 4.1.3.25; EC 3.1.2.30; EC 2.3.3.-; EC 2.3.3.9 from Homo sapiens
CLYBL / Q8N0X4: malate/β-methylmalate synthase (EC 2.3.3.9) from Homo sapiens

33% id,
86% cov

CLYBL_MOUSE / Q8R4N0: Citramalyl-CoA lyase, mitochondrial; (3S)-malyl-CoA thioesterase; Beta-methylmalate synthase; Citrate lyase subunit beta-like protein, mitochondrial; Citrate lyase beta-like; Malate synthase; EC 4.1.3.25; EC 3.1.2.30; EC 2.3.3.-; EC 2.3.3.9 from Mus musculus

32% id,
86% cov

B9Y55_RS06910 SAMN06275492_11525 WP_085544633.1: CoA ester lyase
is similar to:
PaperBLAST

CLYBL_MOUSE / Q8R4N0: Citramalyl-CoA lyase, mitochondrial; (3S)-malyl-CoA thioesterase; Beta-methylmalate synthase; Citrate lyase subunit beta-like protein, mitochondrial; Citrate lyase beta-like; Malate synthase; EC 4.1.3.25; EC 3.1.2.30; EC 2.3.3.-; EC 2.3.3.9 from Mus musculus

33% id,
86% cov

CLYBL_HUMAN / Q8N0X4: Citramalyl-CoA lyase, mitochondrial; (3S)-malyl-CoA thioesterase; Beta-methylmalate synthase; Citrate lyase subunit beta-like protein; Citrate lyase beta-like; Malate synthase; EC 4.1.3.25; EC 3.1.2.30; EC 2.3.3.-; EC 2.3.3.9 from Homo sapiens
CLYBL / Q8N0X4: malate/β-methylmalate synthase (EC 2.3.3.9) from Homo sapiens

32% id,
85% cov

B9Y55_RS05470 SAMN06275492_11112 WP_085544361.1: isocitrate lyase/PEP mutase family protein
is similar to:
PaperBLAST

GCP_CAEEL / Q10663: Bifunctional glyoxylate cycle protein; Gex-3-interacting protein 7; EC 4.1.3.1; EC 2.3.3.9 from Caenorhabditis elegans

33% id,
16% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

37207-38487 (frame -3) on NZ_FXBB01000016.1 Dethiosulfovibrio salsuginis strain USBA 82, whole genome shotgun sequence
is similar to:
PaperBLAST

CLYBL_HUMAN / Q8N0X4: Citramalyl-CoA lyase, mitochondrial; (3S)-malyl-CoA thioesterase; Beta-methylmalate synthase; Citrate lyase subunit beta-like protein; Citrate lyase beta-like; Malate synthase; EC 4.1.3.25; EC 3.1.2.30; EC 2.3.3.-; EC 2.3.3.9 from Homo sapiens
CLYBL / Q8N0X4: malate/β-methylmalate synthase (EC 2.3.3.9) from Homo sapiens
Also see hits to annotated proteins above

32% id,
95% cov

CLYBL_MOUSE / Q8R4N0: Citramalyl-CoA lyase, mitochondrial; (3S)-malyl-CoA thioesterase; Beta-methylmalate synthase; Citrate lyase subunit beta-like protein, mitochondrial; Citrate lyase beta-like; Malate synthase; EC 4.1.3.25; EC 3.1.2.30; EC 2.3.3.-; EC 2.3.3.9 from Mus musculus
Also see hits to annotated proteins above

31% id,
95% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory