Curated BLAST for Genomes

 

Curated BLAST

Searching in Haloechinothrix alba DSM 45207 (GCF_900188115.1)

Found 58 curated entries in PaperBLAST's database that match '1.1.1.25' as complete word(s).

These curated entries have 42 distinct sequences.

Running ublast with E ≤ 0.01

Found 7 relevant proteins in Haloechinothrix alba DSM 45207, or try another query

CHB84_RS09290 SAMN06265360_10874 WP_089301136.1: shikimate dehydrogenase
is similar to:
PaperBLAST

A0A045GU47: shikimate dehydrogenase (NADP+) (EC 1.1.1.25) from Mycobacterium tuberculosis
A5U5Q2: shikimate dehydrogenase (NADP+) (EC 1.1.1.25) from Mycobacterium tuberculosis
P95001: shikimate dehydrogenase (NADP+) (EC 1.1.1.25) from Mycobacterium tuberculosis

56% id,
98% cov

A4QEK4: shikimate dehydrogenase (NADP+) (EC 1.1.1.25) from Corynebacterium glutamicum

46% id,
98% cov

CCNA_00003: shikimate dehydrogenase (EC 1.1.1.25) from Caulobacter crescentus

35% id,
100% cov

More...

aroA CHB84_RS19795 SAMN06265360_1263 WP_217898647.1: 3-phosphoshikimate 1-carboxyvinyltransferase
is similar to:
PaperBLAST

ARO1_YEAST / P08566: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Saccharomyces cerevisiae
ARO1 / P08566: pentafunctional AROM polypeptide (EC 4.2.3.4; EC 1.1.1.25; EC 2.7.1.71; EC 2.5.1.19; EC 4.2.1.10) from Saccharomyces cerevisiae

32% id,
29% cov

ARO1_EMENI / P07547: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Emericella nidulans
aromA: pentafunctional AROM polypeptide; EC 1.1.1.25; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 4.2.3.4 from Emericella nidulans
P07547: shikimate dehydrogenase (NADP+) (EC 1.1.1.25) from Aspergillus nidulans

32% id,
27% cov

CHB84_RS16620 SAMN06265360_11772 WP_089302547.1: acetate--CoA ligase family protein
is similar to:
PaperBLAST

Q88JP1: shikimate dehydrogenase (NADP+) (EC 1.1.1.25); quinate/shikimate dehydrogenase [NAD(P)+] (EC 1.1.1.282) from Pseudomonas putida

41% id,
20% cov

aroB CHB84_RS09255 SAMN06265360_10867 WP_089301130.1: 3-dehydroquinate synthase
is similar to:
PaperBLAST

ARO1_EMENI / P07547: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Emericella nidulans
aromA: pentafunctional AROM polypeptide; EC 1.1.1.25; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 4.2.3.4 from Emericella nidulans
P07547: shikimate dehydrogenase (NADP+) (EC 1.1.1.25) from Aspergillus nidulans

38% id,
18% cov

ARO1_YEAST / P08566: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Saccharomyces cerevisiae
ARO1 / P08566: pentafunctional AROM polypeptide (EC 4.2.3.4; EC 1.1.1.25; EC 2.7.1.71; EC 2.5.1.19; EC 4.2.1.10) from Saccharomyces cerevisiae

35% id,
18% cov

ARO1_YEAST / P08566: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Saccharomyces cerevisiae
ARO1 / P08566: pentafunctional AROM polypeptide (EC 4.2.3.4; EC 1.1.1.25; EC 2.7.1.71; EC 2.5.1.19; EC 4.2.1.10) from Saccharomyces cerevisiae

38% id,
8% cov

More...

CHB84_RS10190 SAMN06265360_10952 WP_089301312.1: fumarate reductase/succinate dehydrogenase flavoprotein subunit
is similar to:
PaperBLAST

A0A168S2B8: shikimate dehydrogenase (NADP+) (EC 1.1.1.25) from Vitis vinifera

30% id,
19% cov

CHB84_RS03270 SAMN06265360_103101 WP_089299969.1: SDR family oxidoreductase
is similar to:
PaperBLAST

A0A6P8EJ47: shikimate dehydrogenase (NADP+) (EC 1.1.1.25) from Punica granatum

46% id,
10% cov

A0A5H2WVH6: shikimate dehydrogenase (NADP+) (EC 1.1.1.25) from Eucalyptus camaldulensis

46% id,
10% cov

CHB84_RS19010 SAMN06265360_12234 WP_089303018.1: SDR family oxidoreductase
is similar to:
PaperBLAST

A0A5H2WZU5: shikimate dehydrogenase (NADP+) (EC 1.1.1.25); 3-dehydroquinate dehydratase (EC 4.2.1.10) from Eucalyptus camaldulensis

38% id,
10% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory