Curated BLAST for Genomes

 

Curated BLAST

Searching in Haloechinothrix alba DSM 45207 (GCF_900188115.1)

Found 52 curated entries in PaperBLAST's database that match '2.5.1.19' as complete word(s).

These curated entries have 41 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Haloechinothrix alba DSM 45207, or try another query

aroA CHB84_RS19795 SAMN06265360_1263 WP_217898647.1: 3-phosphoshikimate 1-carboxyvinyltransferase
is similar to:
PaperBLAST

A3TGI7: 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) from Janibacter sp.

55% id,
96% cov

AROA_MYCTU / P9WPY5: 3-phosphoshikimate 1-carboxyvinyltransferase; 5-enolpyruvylshikimate-3-phosphate synthase; EPSP synthase; EPSPS; EC 2.5.1.19 from Mycobacterium tuberculosis
P9WPY5: 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) from Mycobacterium tuberculosis

47% id,
93% cov

B2IYE4: 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) from Nostoc punctiforme

38% id,
98% cov

More...

murA CHB84_RS17270 SAMN06265360_11891 WP_089302670.1: UDP-N-acetylglucosamine 1-carboxyvinyltransferase
is similar to:
PaperBLAST

AROA_KLEPN / P24497: 3-phosphoshikimate 1-carboxyvinyltransferase; 5-enolpyruvylshikimate-3-phosphate synthase; EPSP synthase; EPSPS; EC 2.5.1.19 from Klebsiella pneumoniae

27% id,
85% cov

AROA_VIBCH / Q9KRB0: 3-phosphoshikimate 1-carboxyvinyltransferase; 5-enolpyruvylshikimate-3-phosphate synthase; EPSP synthase; EPSPS; EC 2.5.1.19 from Vibrio cholerae
Q9KRB0: 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) from Vibrio cholerae

25% id,
85% cov

A2T9R8: 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) from Dunaliella salina

23% id,
83% cov

aroB CHB84_RS09255 SAMN06265360_10867 WP_089301130.1: 3-dehydroquinate synthase
is similar to:
PaperBLAST

ARO1_EMENI / P07547: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Emericella nidulans
aromA: pentafunctional AROM polypeptide; EC 1.1.1.25; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 4.2.3.4 from Emericella nidulans

38% id,
18% cov

ARO1_YEAST / P08566: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Saccharomyces cerevisiae
ARO1 / P08566: pentafunctional AROM polypeptide (EC 4.2.3.4; EC 1.1.1.25; EC 2.7.1.71; EC 2.5.1.19; EC 4.2.1.10) from Saccharomyces cerevisiae

35% id,
18% cov

ARO1_YEAST / P08566: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Saccharomyces cerevisiae
ARO1 / P08566: pentafunctional AROM polypeptide (EC 4.2.3.4; EC 1.1.1.25; EC 2.7.1.71; EC 2.5.1.19; EC 4.2.1.10) from Saccharomyces cerevisiae

38% id,
8% cov

CHB84_RS09290 SAMN06265360_10874 WP_089301136.1: shikimate dehydrogenase
is similar to:
PaperBLAST

ARO1_YEAST / P08566: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Saccharomyces cerevisiae
ARO1 / P08566: pentafunctional AROM polypeptide (EC 4.2.3.4; EC 1.1.1.25; EC 2.7.1.71; EC 2.5.1.19; EC 4.2.1.10) from Saccharomyces cerevisiae

28% id,
18% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

2451-4103 (frame -1) on NZ_FZNW01000026.1 Haloechinothrix alba strain DSM 45207, whole genome shotgun sequence
is similar to:
PaperBLAST

A3TGI7: 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) from Janibacter sp.
Also see hits to annotated proteins above

55% id,
98% cov

A2T9R8: 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) from Dunaliella salina
Also see hits to annotated proteins above

33% id,
98% cov

Q93VK6: 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) from Oryza sativa
Also see hits to annotated proteins above

33% id,
90% cov

More...

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory