Curated BLAST

Curated BLAST for Genomes

Curated BLAST

Searching in Haloechinothrix alba DSM 45207 (GCF_900188115.1)

Found 60 curated entries in PaperBLAST's database that match 'Serine hydroxymethyltransferase' as complete word(s).

These curated entries have 48 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Haloechinothrix alba DSM 45207, or try another query

glyA CHB84_RS21135 SAMN06265360_13613 WP_089303412.1: serine hydroxymethyltransferase is similar to:	PaperBLAST
GLYA2_MYCTU / P9WGI7: Serine hydroxymethyltransferase 2; SHM2; SHMT 2; Serine methylase 2; EC 2.1.2.1 from Mycobacterium tuberculosis	70% id, 100% cov
6uldA: Crystal structure of serine hydroxymethyltransferase from mycobacterium tuberculosis with bound plp forming a schiff base with substrate serine in one monomer and plp forming a schiff base with product glycine in the other monomer	68% id, 97% cov
GLYA1_MYCTU / P9WGI9: Serine hydroxymethyltransferase 1; SHM1; SHMT 1; Serine methylase 1; EC 2.1.2.1 from Mycobacterium tuberculosis	69% id, 95% cov
2dkjA / Q5SI56: Crystal structure of t.Th.Hb8 serine hydroxymethyltransferase	59% id, 99% cov
1kkjA / Q7SIB6: Crystal structure of serine hydroxymethyltransferase from b.Stearothermophilus	59% id, 99% cov
GLYA_THET8 / Q5SI56: Serine hydroxymethyltransferase; SHMT; Serine methylase; EC 2.1.2.1 from Thermus thermophilus	59% id, 98% cov
GLYA_STAAC / Q5HE87: Serine hydroxymethyltransferase; SHMT; Serine methylase; EC 2.1.2.1 from Staphylococcus aureus	58% id, 98% cov
GLYA_BACSU / P39148: Serine hydroxymethyltransferase; SHMT; Serine methylase; EC 2.1.2.1 from Bacillus subtilis	57% id, 99% cov
3pgyB / Q5HE87: Serine hydroxymethyltransferase from staphylococcus aureus, s95p mutant.	57% id, 98% cov
4n0wA / B4ECY9: X-ray crystal structure of a serine hydroxymethyltransferase from burkholderia cenocepacia with covalently attached pyridoxal phosphate	55% id, 100% cov
GLYA_ECOLI / P0A825: Serine hydroxymethyltransferase; SHMT; Serine methylase; EC 2.1.2.1 from Escherichia coli GlyA / b2551: serine hydroxymethyltransferase (EC 2.1.2.1) from Escherichia coli glyA / RF\|NP_417046: serine hydroxymethyltransferase; EC 2.1.2.1 from Escherichia coli glyA / P0A825: serine hydroxymethyltransferase (EC 2.1.2.1) from Escherichia coli 1dfoB / P0A825: Crystal structure at 2.4 angstrom resolution of e. Coli serine hydroxymethyltransferase in complex with glycine and 5-formyl tetrahydrofolate	55% id, 98% cov
GLYA_SALTY / P0A2E1: Serine hydroxymethyltransferase; SHMT; Serine methylase; EC 2.1.2.1 from Salmonella typhimurium glyA: serine hydroxymethyltransferase; EC 2.1.2.1 from Salmonella enterica	55% id, 98% cov
GLYA2_BURP1 / Q3JGP5: Serine hydroxymethyltransferase 2; SHMT 2; Serine methylase 2; EC 2.1.2.1 from Burkholderia pseudomallei	55% id, 98% cov
GLYA_HYDTT / D3DKC4: Serine hydroxymethyltransferase; SHMT; Serine methylase; L-threonine/L-allo-threonine aldolase; EC 2.1.2.1; EC 4.1.2.48 from Hydrogenobacter thermophilus	56% id, 96% cov
6ymdA / I7H6W6: Crystal structure of serine hydroxymethyltransferase from aphanothece halophytica in the covalent complex with malonate	54% id, 98% cov
glyA / P34895: serine hydroxymethyltransferase subunit (EC 2.1.2.1) from Hyphomicrobium methylovorum	53% id, 96% cov
GLYA_CAMJE / P24531: Serine hydroxymethyltransferase; SHMT; Serine methylase; EC 2.1.2.1 from Campylobacter jejuni glyA: serine hydroxymethyltransferase; EC 2.1.2.1 from Campylobacter jejuni	52% id, 98% cov
GLYA_METBF / Q46A52: Serine hydroxymethyltransferase; SHMT; Serine methylase; EC 2.1.2.1 from Methanosarcina barkeri	51% id, 99% cov
1rv3B / P07511: E75l mutant of rabbit cytosolic serine hydroxymethyltransferase, complex with glycine	45% id, 92% cov
6cd1A / G7ILW0: Crystal structure of medicago truncatula serine hydroxymethyltransferase 3 (mtshmt3), complexes with reaction intermediates	44% id, 95% cov
GLYC_RABIT / P07511: Serine hydroxymethyltransferase, cytosolic; SHMT; Glycine hydroxymethyltransferase; Serine methylase; EC 2.1.2.1 from Oryctolagus cuniculus	46% id, 90% cov
GLYC_MOUSE / P50431: Serine hydroxymethyltransferase, cytosolic; SHMT; Glycine hydroxymethyltransferase; Serine methylase; EC 2.1.2.1 from Mus musculus	46% id, 90% cov
1ejiA / P50431: Recombinant serine hydroxymethyltransferase (mouse)	46% id, 90% cov
GLYC_HUMAN / P34896: Serine hydroxymethyltransferase, cytosolic; SHMT; Glycine hydroxymethyltransferase; Serine methylase; EC 2.1.2.1 from Homo sapiens SHMT1 / P34896: serine hydroxymethyltransferase, cytosolic (EC 2.1.2.1) from Homo sapiens	45% id, 89% cov
GLYC_SHEEP / P35623: Serine hydroxymethyltransferase, cytosolic; SHMT; Glycine hydroxymethyltransferase; Serine methylase; EC 2.1.2.1 from Ovis aries	45% id, 89% cov
GLYC_BOMMO / Q2F5L3: Serine hydroxymethyltransferase; SHMT; Glycine hydroxymethyltransferase; Serine methylase; bmSHMT; EC 2.1.2.1 from Bombyx mori	45% id, 88% cov
GLYM_HUMAN / P34897: Serine hydroxymethyltransferase, mitochondrial; SHMT; Glycine hydroxymethyltransferase; Serine methylase; EC 2.1.2.1 from Homo sapiens SHMT2 / P34897: serine hydroxymethyltransferase (EC 2.1.2.1) from Homo sapiens	43% id, 89% cov
GLYM_MOUSE / Q9CZN7: Serine hydroxymethyltransferase, mitochondrial; SHMT; Glycine hydroxymethyltransferase; Serine methylase; EC 2.1.2.1 from Mus musculus	43% id, 89% cov
GLYC_CANAL / O13426: Serine hydroxymethyltransferase, cytosolic; SHMT; Glycine hydroxymethyltransferase; SHMII; Serine methylase; EC 2.1.2.1 from Candida albicans SHM2: serine hydroxymethyltransferase; EC 2.1.2.1 from Candida albicans	43% id, 87% cov
8dskA / A0A0R0IK90: Structure of the n358y variant of serine hydroxymethyltransferase 8 in complex with plp, glycine, and formyl tetrahydrofolate	43% id, 86% cov
6smnD / Q94C74: A. Thaliana serine hydroxymethyltransferase isoform 2 (atshmt2) in complex with methotrexate	42% id, 88% cov
7e13A: Caprylic acid targets a serine hydroxymethyltransferase to kill horseweed	42% id, 87% cov
GLYC4_ARATH / O23254: Serine hydroxymethyltransferase 4; AtSHMT4; Glycine hydroxymethyltransferase 4; Serine methylase 4; EC 2.1.2.1 from Arabidopsis thaliana	42% id, 88% cov
GLYM_SCHPO / Q10104: Serine hydroxymethyltransferase, mitochondrial; SHMT; Glycine hydroxymethyltransferase; Serine methylase; EC 2.1.2.1 from Schizosaccharomyces pombe	43% id, 85% cov
6smrA / O23254: A. Thaliana serine hydroxymethyltransferase isoform 4 (atshmt4) in complex with methotrexate	42% id, 87% cov
GLYC_YEAST / P37291: Serine hydroxymethyltransferase, cytosolic; SHMT; Glycine hydroxymethyltransferase; Serine methylase; EC 2.1.2.1 from Saccharomyces cerevisiae SHM2 / P37291: serine hydroxymethyltransferase, cytosolic (EC 2.1.2.1) from Saccharomyces cerevisiae	41% id, 89% cov
SHMT / Q8W4V3: serine hydroxymethyltransferase (EC 2.1.2.1) from Chlamydomonas reinhardtii	43% id, 84% cov
GLYC_EREGS / Q75BQ6: Serine hydroxymethyltransferase, cytosolic; SHMT; Glycine hydroxymethyltransferase; Serine methylase; EC 2.1.2.1 from Eremothecium gossypii	42% id, 86% cov
GLYM_YEAST / P37292: Serine hydroxymethyltransferase, mitochondrial; SHMT; Glycine hydroxymethyltransferase; Serine methylase; EC 2.1.2.1 from Saccharomyces cerevisiae SHM1 / P37292: serine hydroxymethyltransferase, mitochondrial (EC 2.1.2.1) from Saccharomyces cerevisiae	43% id, 83% cov
GLYA_PLAF7 / Q8I566: Serine hydroxymethyltransferase; PfSHMTc; EC 2.1.2.1 from Plasmodium falciparum	39% id, 91% cov
GLYM_EREGS / Q758F0: Serine hydroxymethyltransferase, mitochondrial; SHMT; Glycine hydroxymethyltransferase; Serine methylase; EC 2.1.2.1 from Eremothecium gossypii	44% id, 81% cov
4o6zA / Q8I566: Crystal structure of serine hydroxymethyltransferase with covalently bound plp schiff-base from plasmodium falciparum	40% id, 90% cov
GLYM1_ARATH / Q9SZJ5: Serine hydroxymethyltransferase 1, mitochondrial; AtSHMT1; Glycine hydroxymethyltransferase 1; Serine Transhydroxymethyltransferase; STM; Serine methylase 1; EC 2.1.2.1 from Arabidopsis thaliana SHM1 / Q9SZJ5: serine hydroxymethyltransferase (EC 2.1.2.1) from Arabidopsis thaliana	43% id, 82% cov
GLYP3_ARATH / Q94JQ3: Serine hydroxymethyltransferase 3, chloroplastic; AtSHM3; AtSHMT3; Glycine hydroxymethyltransferase 3; Serine methylase 3; EC 2.1.2.1 from Arabidopsis thaliana	46% id, 76% cov
GLYM2_ARATH / Q94C74: Serine hydroxymethyltransferase 2, mitochondrial; AtSHMT2; Glycine hydroxymethyltransferase 2; Serine methylase 2; EC 2.1.2.1 from Arabidopsis thaliana	42% id, 82% cov
GLYA_METTH / O27433: Serine hydroxymethyltransferase; SHMT; Serine methylase; EC 2.1.2.- from Methanothermobacter thermautotrophicus	35% id, 93% cov
GLYA_METJA / Q58992: Serine hydroxymethyltransferase; SHMT; Serine methylase; L-allo-threonine aldolase; EC 2.1.2.-; EC 4.1.2.49 from Methanocaldococcus jannaschii	34% id, 91% cov
GLYA_SACS2 / Q9UWT5: Serine hydroxymethyltransferase; SHMT; Serine methylase; EC 2.1.2.- from Saccharolobus solfataricus	30% id, 92% cov
More...

CHB84_RS16370 SAMN06265360_11721 WP_089302506.1: DegT/DnrJ/EryC1/StrS family aminotransferase is similar to:	PaperBLAST
GLYA2_MYCTU / P9WGI7: Serine hydroxymethyltransferase 2; SHM2; SHMT 2; Serine methylase 2; EC 2.1.2.1 from Mycobacterium tuberculosis	25% id, 64% cov
GLYA2_BURP1 / Q3JGP5: Serine hydroxymethyltransferase 2; SHMT 2; Serine methylase 2; EC 2.1.2.1 from Burkholderia pseudomallei	27% id, 40% cov
6ymdA / I7H6W6: Crystal structure of serine hydroxymethyltransferase from aphanothece halophytica in the covalent complex with malonate	25% id, 38% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory