Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfurobacterium atlanticum DSM 15668 (GCF_900188395.1)

Found 58 curated entries in PaperBLAST's database that match '1.1.1.25' as complete word(s).

These curated entries have 42 distinct sequences.

Running ublast with E ≤ 0.01

Found 7 relevant proteins in Desulfurobacterium atlanticum DSM 15668, or try another query

CHB58_RS05940 SAMN06265340_10768 WP_089323192.1: shikimate dehydrogenase
is similar to:		 PaperBLAST

AROE_AQUAE / O67049: Shikimate dehydrogenase (NADP(+)); SD; SDH; EC 1.1.1.25 from Aquifex aeolicus
O67049: shikimate dehydrogenase (NADP+) (EC 1.1.1.25) from Aquifex aeolicus

 52% id,
97% cov

AROE_METJA / Q58484: Shikimate dehydrogenase (NADP(+)); SDH; EC 1.1.1.25 from Methanocaldococcus jannaschii
aroE / Q58484: shikimate dehydrogenase monomer (EC 1.1.1.25) from Methanocaldococcus jannaschii

 50% id,
99% cov

AROE_GEOKA / Q5KWX7: Shikimate dehydrogenase (NADP(+)); SDH; EC 1.1.1.25 from Geobacillus kaustophilus

 47% id,
99% cov

More...

aroD CHB58_RS01245 SAMN06265340_101249 WP_089322278.1: type I 3-dehydroquinate dehydratase
is similar to:		 PaperBLAST

A0A168S2H6: shikimate dehydrogenase (NADP+) (EC 1.1.1.25) from Vitis vinifera

 30% id,
46% cov

A0A5H2X4C4: shikimate dehydrogenase (NADP+) (EC 1.1.1.25); 3-dehydroquinate dehydratase (EC 4.2.1.10) from Eucalyptus camaldulensis

 33% id,
41% cov

A0A5H2WZU5: shikimate dehydrogenase (NADP+) (EC 1.1.1.25); 3-dehydroquinate dehydratase (EC 4.2.1.10) from Eucalyptus camaldulensis

 31% id,
43% cov

More...

hemA CHB58_RS01235 SAMN06265340_101247 WP_089322276.1: glutamyl-tRNA reductase
is similar to:		 PaperBLAST

AROE_METJA / Q58484: Shikimate dehydrogenase (NADP(+)); SDH; EC 1.1.1.25 from Methanocaldococcus jannaschii
aroE / Q58484: shikimate dehydrogenase monomer (EC 1.1.1.25) from Methanocaldococcus jannaschii

 28% id,
46% cov

CCNA_00003: shikimate dehydrogenase (EC 1.1.1.25) from Caulobacter crescentus

 34% id,
35% cov

Q9WYI1: shikimate dehydrogenase (NADP+) (EC 1.1.1.25) from Thermotoga maritima

 40% id,
26% cov

More...

fabG CHB58_RS05805 SAMN06265340_10741 WP_089323166.1: 3-oxoacyl-[acyl-carrier-protein] reductase
is similar to:		 PaperBLAST

AROE_THET8 / Q5SJF8: Shikimate dehydrogenase (NADP(+)); SDH; EC 1.1.1.25 from Thermus thermophilus
Q5SJF8: shikimate dehydrogenase (NADP+) (EC 1.1.1.25) from Thermus thermophilus

 32% id,
24% cov

aroA CHB58_RS05565 SAMN06265340_10690 WP_089323118.1: 3-phosphoshikimate 1-carboxyvinyltransferase
is similar to:		 PaperBLAST

ARO1_EMENI / P07547: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Emericella nidulans
aromA: pentafunctional AROM polypeptide; EC 1.1.1.25; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 4.2.3.4 from Emericella nidulans
P07547: shikimate dehydrogenase (NADP+) (EC 1.1.1.25) from Aspergillus nidulans

 27% id,
28% cov

CHB58_RS01470 SAMN06265340_101294 WP_089322319.1: FAD-binding protein
is similar to:		 PaperBLAST

DHQSD_ARATH / Q9SQT8: Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic; DHQ-SDH protein; DHQase-SORase; Protein EMBRYO DEFECTIVE 3004; EC 4.2.1.10; EC 1.1.1.25 from Arabidopsis thaliana
AT3G06350 / Q9SQT8: shikimate dehydrogenase (EC 1.1.1.25; EC 4.2.1.10) from Arabidopsis thaliana
Q9SQT8: shikimate dehydrogenase (NADP+) (EC 1.1.1.25); 3-dehydroquinate dehydratase (EC 4.2.1.10) from Arabidopsis thaliana

 33% id,
17% cov

rsmG CHB58_RS03465 SAMN06265340_103173 WP_245807327.1: 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG
is similar to:		 PaperBLAST

AROE_LISMO / Q8Y9N5: Shikimate dehydrogenase (NADP(+)); SDH; EC 1.1.1.25 from Listeria monocytogenes

 31% id,
17% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 7 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory