Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfurobacterium atlanticum DSM 15668 (GCF_900188395.1)

Found 17 curated entries in PaperBLAST's database that match '1.1.2.3' as complete word(s).

These curated entries have 15 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Desulfurobacterium atlanticum DSM 15668, or try another query

CHB58_RS03870 SAMN06265340_10445 WP_089322798.1: (Fe-S)-binding protein
is similar to:
PaperBLAST

lldE / Q8EGS4: L-lactate dehydrogenase LldE subunit (EC 1.1.2.3) from Shewanella oneidensis

29% id,
98% cov

DVU_3033 / Q726S3: quinone-dependent L-lactate dehydrogenase large subunit (EC 1.1.2.3) from Desulfovibrio vulgaris

31% id,
56% cov

CHB58_RS06225 SAMN06265340_10829 WP_089323248.1: glutamate synthase-related protein
is similar to:
PaperBLAST

SM_b20850: L-lactate dehydrogenase (cytochrome) (EC 1.1.2.3) from Sinorhizobium meliloti

34% id,
20% cov

W1QKE8: L-lactate dehydrogenase (cytochrome) (EC 1.1.2.3) from Ogataea angusta

30% id,
18% cov

Q9HV37: L-lactate dehydrogenase (cytochrome) (EC 1.1.2.3) from Pseudomonas aeruginosa

39% id,
12% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory