Curated BLAST for Genomes

 

Curated BLAST

Searching in Rhodobacter maris JA276 (GCF_900217815.1)

Found 22 curated entries in PaperBLAST's database that match '1.3.8.5' as complete word(s).

These curated entries have 20 distinct sequences.

Running ublast with E ≤ 0.01

Found 7 relevant proteins in Rhodobacter maris JA276, or try another query

CRO22_RS11805 SAMN05877831_10859 WP_097070363.1: acyl-CoA dehydrogenase family protein
is similar to:		 PaperBLAST

MBCD_SOLTU / Q9FS88: 2-methylacyl-CoA dehydrogenase, mitochondrial; 2-methylbutanoyl-CoA dehydrogenase; 2-methylbutyryl-CoA dehydrogenase; 2MBCD; Isovaleryl-CoA dehydrogenase 1; St-IVD1; EC 1.3.8.5 from Solanum tuberosum

 57% id,
90% cov

PfGW456L13_2983: 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas fluorescens

 40% id,
99% cov

AO356_26355: 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas fluorescens

 40% id,
99% cov

More...

CRO22_RS10865 SAMN05877831_10736 WP_097070176.1: acyl-CoA dehydrogenase family protein
is similar to:		 PaperBLAST

SO1679: 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) from Shewanella oneidensis

 49% id,
99% cov

ACAD8_HUMAN / Q9UKU7: Isobutyryl-CoA dehydrogenase, mitochondrial; IBDH; Activator-recruited cofactor 42 kDa component; ARC42; Acyl-CoA dehydrogenase family member 8; ACAD-8; EC 1.3.8.5 from Homo sapiens

 52% id,
90% cov

Psest_2440: isobutyryl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas stutzeri

 42% id,
98% cov

More...

CRO22_RS07005 SAMN05877831_103208 WP_097069413.1: acyl-CoA dehydrogenase family protein
is similar to:		 PaperBLAST

PP_3492: isobutyryl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas putida

 38% id,
99% cov

Psest_2440: isobutyryl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas stutzeri

 38% id,
98% cov

AO353_25670: isobutyryl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas fluorescens

 37% id,
98% cov

More...

CRO22_RS03490 SAMN05877831_101709 WP_097068681.1: acyl-CoA dehydrogenase family protein
is similar to:		 PaperBLAST

Pf6N2E2_1146: 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas fluorescens

 37% id,
99% cov

AO356_26355: 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas fluorescens

 37% id,
99% cov

PS417_13840: isobutyryl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas simiae

 37% id,
97% cov

More...

CRO22_RS09210 SAMN05877831_10584 WP_097069853.1: acyl-CoA dehydrogenase
is similar to:		 PaperBLAST

AO356_26355: 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas fluorescens

 35% id,
99% cov

Pf6N2E2_1146: 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas fluorescens

 34% id,
99% cov

PS417_13850: 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas simiae

 34% id,
99% cov

More...

CRO22_RS06165 SAMN05877831_10341 WP_097069265.1: acyl-CoA dehydrogenase C-terminal domain-containing protein
is similar to:		 PaperBLAST

PfGW456L13_2985: isobutyryl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas fluorescens

 29% id,
99% cov

PP_3492: isobutyryl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas putida

 29% id,
98% cov

PS417_13840: isobutyryl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas simiae

 31% id,
89% cov

More...

CRO22_RS15095 SAMN05877831_11428 WP_097070995.1: acyl-CoA dehydrogenase
is similar to:		 PaperBLAST

Psest_2440: isobutyryl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas stutzeri

 32% id,
88% cov

PP_3492: isobutyryl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas putida

 34% id,
82% cov

AO353_25670: isobutyryl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas fluorescens

 31% id,
88% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 7 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

59897-61183 (frame -1) on NZ_OBMT01000008.1 Rhodobacter maris strain JA276, whole genome shotgun sequence
is similar to:		 PaperBLAST

MBCD_SOLTU / Q9FS88: 2-methylacyl-CoA dehydrogenase, mitochondrial; 2-methylbutanoyl-CoA dehydrogenase; 2-methylbutyryl-CoA dehydrogenase; 2MBCD; Isovaleryl-CoA dehydrogenase 1; St-IVD1; EC 1.3.8.5 from Solanum tuberosum
Also see hits to annotated proteins above

 55% id,
96% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory