PaperBLAST – Find papers about a protein or its homologs

 

Align A3MTK6 to PF01930 (Cas_Cas4)

A3MTK6 has 213 amino acids

Query:       Cas_Cas4  [M=160]
Accession:   PF01930.23
Description: Domain of unknown function DUF83
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-18   54.1   0.8    2.2e-18   53.0   0.8    1.5  1  A3MTK6    


Domain annotation for each sequence (and alignments):
>> A3MTK6  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.0   0.8   2.2e-18   2.2e-18       4     159 ..      57     210 ..      54     211 .. 0.79

  Alignments for each domain:
  == domain 1  score: 53.0 bits;  conditional E-value: 2.2e-18
  Cas_Cas4   4 einyylvCkrklwlfsr.gitm..eeeselvelGklihe......esykr..ekkevele..kikiDvvkkekeklvvvevKkskkieeaaklQllyYlll 91 
                in + +C+r lw  ++ g+++  e++  ++  G+++he      ++y++   + +ve++   + +D+v k++++ ++ve+K + + +ea+k Ql+ Y+ +
    A3MTK6  57 IINDFEYCPRLLWVQHKlGLKLlsEKSVVSIIRGRILHEryerllSQYENvvAEYKVEIGdlVGVVDLVIKRGGEYIPVEIKTGFS-KEAHKTQLQIYISM 156
               6999**********9998666511555556667******77666655555433377888457899*******************99.99************ PP

  Cas_Cas4  92 Lekkgieak.GvleypeekkreeveldeedreeleevikeieeiissekppeaekkkiCkkCayaelCv 159
               L+      + G+l y   ++ +ev     +++++ +v+k+i+ei+s  + p+a    +C++C ++ +C 
    A3MTK6 157 LKA-----RfGYLVY---RNHVEVVH---RNDAALDVLKKIREILSAREAPPA----KCNSCIFKPICK 210
               984.....4488887...44555544...5677889***********988886....6*******9995 PP



Or compare A3MTK6 to CDD or PaperBLAST