PaperBLAST – Find papers about a protein or its homologs

 

Align B4DST3 to PF02965 (Met_synt_B12)

B4DST3 has 1118 amino acids

Query:       Met_synt_B12  [M=273]
Accession:   PF02965.22
Description: Vitamin B12 dependent methionine synthase, activation domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   3.3e-119  383.4   0.0   5.4e-119  382.7   0.0    1.4  1  B4DST3    


Domain annotation for each sequence (and alignments):
>> B4DST3  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  382.7   0.0  5.4e-119  5.4e-119       1     273 []     819    1100 ..     819    1100 .. 0.98

  Alignments for each domain:
  == domain 1  score: 382.7 bits;  conditional E-value: 5.4e-119
  Met_synt_B12    1 dleelveyidWtpffqawelkgky.....pkiledekvgeeakklfkdAqamLkkiieekllkakavvglfpansvgddievyades...rseel 87  
                    dl++lv+yidW+pff++w+l+gky     pki++d++vg ea+k+++dA++mL+++i++k+l+a++vvg++pa+s +ddi++ya+ +    +e +
        B4DST3  819 DLQKLVDYIDWKPFFDVWQLRGKYpnrgfPKIFNDKTVGGEARKVYDDAHNMLNTLISQKKLRARGVVGFWPAQSIQDDIHLYAEAAvpqAAEPI 913 
                    699*********************99999******************************************************988765567799 PP

  Met_synt_B12   88 atlhtLrqqaeke..egepnlclaDfvapkesgvkDyiGlfavtaglgieelakefeaeeDdYsailvkalaDrLaeAfaellhekvrkelWgya 180 
                    at++ Lrqqaek+  ++ep++cl+Df+ap +sg++Dy+Glfav++ +g+eel k++e++ DdYs+i+vkal DrLaeAfae lhe+vr+elW y 
        B4DST3  914 ATFYGLRQQAEKDsaSTEPYYCLSDFIAPLHSGIRDYLGLFAVAC-FGVEELSKAYEDDGDDYSSIMVKALGDRLAEAFAEELHERVRRELWAYC 1007
                    ***********997788999*************************.************************************************* PP

  Met_synt_B12  181 kdeklsneelikekYqGiRpApGYpacpdhsekktlfelldaeekigieLteslamtPaasvsGlyfahpeskyFavgkiekdqvedyakrkg 273 
                      e+l++ +l + +Y+GiRpApGYp++pdh+ek t+++l d+e+++gi+Lteslam Pa++vsGlyf++ +skyFavgki+kdqvedya rk+
        B4DST3 1008 GSEQLDVADLRRLRYKGIRPAPGYPSQPDHTEKLTMWRLADIEQSTGIRLTESLAMAPASAVSGLYFSNLKSKYFAVGKISKDQVEDYALRKN 1100
                    *******************************************************************************************96 PP



Or compare B4DST3 to CDD or PaperBLAST