PaperBLAST – Find papers about a protein or its homologs

 

Align B4FWP8 to PF04504 (GeBP-like_DBD)

B4FWP8 has 555 amino acids

Query:       GeBP-like_DBD  [M=94]
Accession:   PF04504.20
Description: Glabrous-enhancer-binding protein-like family, DBD domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-20   60.5   0.4    4.5e-20   58.5   0.1    2.2  2  B4FWP8    


Domain annotation for each sequence (and alignments):
>> B4FWP8  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0      0.76      0.76      66      88 ..      48      71 ..      36      73 .. 0.70
   2 !   58.5   0.1   4.5e-20   4.5e-20       1      94 []     236     324 ..     236     324 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 0.76
  GeBP-like_DBD 66 kakka.kgkepsfskphdqklfel 88
                   +a+++ + ++  ++++ d ++f++
         B4FWP8 48 AAANNaDSSDADSDSDADVQAFQM 71
                   444445778888888889999986 PP

  == domain 2  score: 58.5 bits;  conditional E-value: 4.5e-20
  GeBP-like_DBD   1 fqrlWseeDEieiLqglldfksktgkspkddldafyeavkkslsfdvsk.eqlveKirrLkkkyenkakkakgkepsfskphdqklfelskkIWg 94 
                    f+r W ++DE++iL++l+++ + +g    +++d + ++v+++l  +  + ++++eK+rrLk++ye+ ++     +  +sk+++ ++++lsk+IWg
         B4FWP8 236 FSRTWEKDDEMKILEALAAHVKSEGVL--PKTDFLLASVRDRLVRKNCNyTDIYEKVRRLKERYEKLVST----GTVPSKEDELQMYNLSKTIWG 324
                    78************************9..79999*******998654445***************99975....7899****************8 PP



Or compare B4FWP8 to CDD or PaperBLAST