PaperBLAST – Find papers about a protein or its homologs

 

Align BRENDA::B2Z3X2 to PF11901 (DM9)

BRENDA::B2Z3X2 has 146 amino acids

Query:       DM9  [M=115]
Accession:   PF11901.12
Description: DM9 repeat
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.2e-49  151.0   0.6    1.8e-47  146.3   0.5    2.5  3  BRENDA::B2Z3X2  


Domain annotation for each sequence (and alignments):
>> BRENDA::B2Z3X2  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0   6.1e-05   6.1e-05      54      82 ..       3      32 ..       1      32 [. 0.87
   2 !  146.3   0.5   1.8e-47   1.8e-47       1     114 [.      25     135 ..      25     136 .. 0.98
   3 !    6.6   0.0    0.0004    0.0004      34      49 ..     129     144 ..     129     146 .] 0.89

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 6.1e-05
             DM9 54 eyeWvpss.dgsvpkgAvegGttedgeply 82
                    e +Wv+++ d ++p+ Av++G+++dg p++
  BRENDA::B2Z3X2  3 EHHWVSTTiDSELPPFAVQAGHDSDGSPIF 32
                    5789988747899**************997 PP

  == domain 2  score: 146.3 bits;  conditional E-value: 1.8e-47
             DM9   1 dsdgspiYvgRakhegdllpgkvvpekgaayvsyggkehekseyevLvakepseyeWvpssdgsvpkgAvegGttedgeplyigrakyegsltiG 95 
                     dsdgspi+vgRa+h+gd+l +k+vp+kg+ayv++gg+e++k++ evL+    ++y+Wvp+ +g vp+gAv +G+t+ ge+ly+gr+++ +slt+G
  BRENDA::B2Z3X2  25 DSDGSPIFVGRAYHNGDMLVAKIVPNKGQAYVAWGGEEVNKHDIEVLTG---HNYHWVPDANGAVPAGAVACGQTSLGETLYVGRGYHADSLTPG 116
                     79**********************************************5...79***************************************** PP

             DM9  96 kvhpshkvlyipyggkevs 114
                     k+hps+++lyi +gg+ev+
  BRENDA::B2Z3X2 117 KIHPSQGCLYIGFGGEEVT 135
                     *****************96 PP

  == domain 3  score: 6.6 bits;  conditional E-value: 0.0004
             DM9  34 yggkehekseyevLva 49 
                     +gg+e++ ++yevLv+
  BRENDA::B2Z3X2 129 FGGEEVTLTNYEVLVR 144
                     69************94 PP



Or compare BRENDA::B2Z3X2 to CDD or PaperBLAST