PaperBLAST – Find papers about a protein or its homologs

 

Align C0H483 to PF05346 (DUF747)

C0H483 has 1283 amino acids

Query:       DUF747  [M=315]
Accession:   PF05346.16
Description: Eukaryotic membrane protein family
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-86  277.4  30.5    1.1e-86  277.4  30.5    2.2  2  C0H483    


Domain annotation for each sequence (and alignments):
>> C0H483  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   1.4      0.23      0.23     211     237 ..     356     390 ..     352     452 .. 0.56
   2 !  277.4  30.5   1.1e-86   1.1e-86       4     314 ..     788    1267 ..     785    1268 .. 0.97

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 0.23
  DUF747 211 NkikpsvYrkfldvlakdllssrkkk........a 237
             N+ik + Y k+   +++d++ s +          +
  C0H483 356 NEIKLNYYFKYKGNMINDTYYSDNIYdmekenwtK 390
             67777777777777777766664443333333331 PP

  == domain 2  score: 277.4 bits;  conditional E-value: 1.1e-86
  DUF747    4 sekadllklllilvsviilsklDaSrlYHsirgqsviKLyvifnvLEvaDkLlsslgqdildalfstat................................ 72  
               e++ +++l+lil++++i+s +D+Sr+YH+ir+q ++KLyv++n+LE++++Ll+slg+d++d +++t                                  
  C0H483  788 PEYSGIIRLSLILICIYIFSFVDTSRIYHYIRAQPFMKLYVVLNMLEILERLLRSLGKDLIDNMIRTFIriinlrsyiciirnnynekssinsnsnyinyv 888 
              578899**************************************************************9******************************** PP

  DUF747   73 ..................................................................................................... 72  
                                                                                                                   
  C0H483  889 hndnygvnsyiyknkdnnnelitfdntrhinvftnknkdnllnnnnnnmnymnymykdsviknkheyengyvtnmdkdifsnnfymnnirhhadsfyyqne 989 
              ***************************************************************************************************** PP

  DUF747   73 ...................................kskskllrlillfilalvyvvlHslvllyqvvtLnVavnSysnaLltLLlsnqfvEiKssVFKkfe 138 
                                                    s +l++++++i++l+y+++H++++l+++++Ln+a+nS++++++++L++++f+EiKs+VFKkf+
  C0H483  990 lnsfnlnknkennvrffnnendkkknnkskisilfPFYSVVLKFTIQYIFVLAYILIHAFMHLVRFLSLNIAINSSESTMFLILVMSNFTEIKSTVFKKFT 1090
              ******************999999888776665552679************************************************************** PP

  DUF747  139 kenlfqltcaDvvERfqlllllliialrnlvelsssssseeellgellsplllvlgsEvlvDwlKHafitkFNkikpsvYrkfldvlakdllssrkkk... 236 
              k +lf+++++D+vERf l++  ++++l++ ++     ++++++++++ s+l+++l+ Ev vDw+KH+++ k+Nk++++  +k++++l++d+l sr+ +   
  C0H483 1091 KISLFTIVASDAVERFYLFIDAFLVLLKMSTA-----YRTQNSFFSISSWLIIILLLEVGVDWCKHSYLLKYNKLDSESLNKYFHTLLADVLISRTPNkni 1186
              ********************************.....7999*****************************************************99999** PP

  DUF747  237 ............afvdqseklarrlGlpvlplavlfirvllqtlkmllatslkllslltallllllvflillllklllgilllkvarkrv 314 
                          +++++s++ +rrlG++++p+++l++++l++    ++         ++ + ++l ++++l+l+k++l+i++++++++++
  C0H483 1187 yymkdsfavpckNIFSFSHIPTRRLGYMSMPVVTLIVCSLPRLNYLSN---------ISLFSFALSIWICLFLFKIILSIMIVSYTISEK 1267
              *****************************************9999988.........789999**********************99875 PP



Or compare C0H483 to CDD or PaperBLAST