PaperBLAST – Find papers about a protein or its homologs

 

Align D1JG69 to PF01169 (UPF0016)

D1JG69 has 185 amino acids

Query:       UPF0016  [M=75]
Accession:   PF01169.23
Description: Uncharacterized protein family UPF0016
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-45  139.2  12.6    1.4e-24   72.5   2.3    2.1  2  D1JG69    


Domain annotation for each sequence (and alignments):
>> D1JG69  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.5   2.3   1.4e-24   1.4e-24       4      75 .]       9      81 ..       6      81 .. 0.97
   2 !   72.4   2.9   1.6e-24   1.6e-24       3      75 .]     107     179 ..     105     179 .. 0.98

  Alignments for each domain:
  == domain 1  score: 72.5 bits;  conditional E-value: 1.4e-24
  UPF0016  4 flliflaElGDkTqlatiaLAary.kplaVflGatlAlalatllavllGsllakrlperlvklvaavlFlvfG 75
             ++++ laElGDkTql t++LA+++ k l+ +lG++lA+++++++a+l+G+++++  p++l+k++++++F++fG
   D1JG69  9 LIVVGLAELGDKTQLSTLLLASKTdKHLHLLLGIILAFLIVDGIAILAGEWITDIAPRELIKMLSGAIFIIFG 81
             68999*******************************************************************9 PP

  == domain 2  score: 72.4 bits;  conditional E-value: 1.6e-24
  UPF0016   3 sflliflaElGDkTqlatiaLAarykplaVflGatlAlalatllavllGsllakrlperlvklvaavlFlvfG 75 
               f+lif++E+GDkTq+at ++A++y+ l+V++G+++Al l +++a++ G+++++++ +++++ ++++lF+ +G
   D1JG69 107 GFILIFVSEWGDKTQIATGLFATQYNGLMVLTGVIIALSLLSVIAIYSGKFISDKVTRETLTKLTGFLFISMG 179
              69********************************************************************998 PP



Or compare D1JG69 to CDD or PaperBLAST