PaperBLAST – Find papers about a protein or its homologs

 

Align F4K000 to PF03690 (UPF0160)

F4K000 has 373 amino acids

Query:       UPF0160  [M=318]
Accession:   PF03690.17
Description: Uncharacterised protein family (UPF0160)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   9.7e-142  458.3   0.0   1.1e-141  458.1   0.0    1.0  1  F4K000    


Domain annotation for each sequence (and alignments):
>> F4K000  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  458.1   0.0  1.1e-141  1.1e-141       1     318 []      52     371 ..      52     371 .. 0.99

  Alignments for each domain:
  == domain 1  score: 458.1 bits;  conditional E-value: 1.1e-141
  UPF0160   1 kigTHsgsFhaDevlAvalLrllpeykdaeivRtrdpevlekcdivvDVggvydpekkryDHHqrefketfsekkktklSSaGLvykhfgkeiikkllklkv 102
              k+gTH+gsFh+De+l+++++rl+++++ a+ivR+rdp++l++ d v+DVggvydpe++ryDHHq++f+e+f ++++tklSSaGLvykhfgkeii+k l++++
   F4K000  52 KVGTHNGSFHCDEALGCFMIRLVDKFSGADIVRSRDPKILAELDAVLDVGGVYDPEHDRYDHHQKGFEEVFGHGFNTKLSSAGLVYKHFGKEIIAKELNVEQ 153
              69**************************************************************************************************** PP

  UPF0160 103 deeevellyeklyeefieaiDaiDnGisvydeevepkykikttlssrvsrlnpswne.eeseedederFekAselvgeeflekvkkyakswlpareivkeal 203
              d+++v  l+ ++y++f+eaiDa+DnGi+ yd+++ p+y ++t+ls rv+rln +w + ++s+e+e+e+F++A++l+g+efle+v+ +a+swlpar+iv ++l
   F4K000 154 DHPDVLRLFLAVYKSFMEAIDAVDNGINRYDTDQPPRYVNNTHLSPRVGRLNLDWIDpDQSQEKENEAFQRAMALAGKEFLESVQFHARSWLPARSIVMQCL 255
              ********************************************************99999***************************************** PP

  UPF0160 204 ekrkevdesgrilvleqsvpwkehllelekelkiekeilyvlyed.eskkwrvqavpvseesfesrkpLpeewrGlrdeeLsevsgiegavFvhasgFigga 304
              e+r+++d+sg+i++l++++pwk hl+ele+e+kie  i+yv+y+d + k+wrvqav v++++fe+rkpLpe+wrGlrdeeLs++++i+g+vFvh sgFigg+
   F4K000 256 EERFKTDPSGEIMILDRFCPWKLHLFELEQEMKIEPLIKYVIYQDeRAKQWRVQAVAVAPDRFENRKPLPEKWRGLRDEELSKAAEIPGCVFVHMSGFIGGN 357
              *******************************************87799****************************************************** PP

  UPF0160 305 ktkegalkmakkal 318
              ++++gal ma++al
   F4K000 358 QSYDGALSMAQTAL 371
              ***********997 PP



Or compare F4K000 to CDD or PaperBLAST