PaperBLAST – Find papers about a protein or its homologs

 

Align F6HEA6 to PF15249 (GLTSCR1)

F6HEA6 has 381 amino acids

Query:       GLTSCR1  [M=102]
Accession:   PF15249.10
Description: Conserved region of unknown function on GLTSCR protein
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-32   97.3   0.4    3.3e-32   97.3   0.4    3.2  3  F6HEA6    


Domain annotation for each sequence (and alignments):
>> F6HEA6  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -7.9  16.4         1         1      67     101 ..      14      48 ..       3      75 .. 0.50
   2 !   97.3   0.4   3.3e-32   3.3e-32       1     101 [.     145     259 ..     145     260 .. 0.97
   3 ?   -2.3   0.2      0.36      0.36      62      79 ..     276     293 ..     264     304 .. 0.48

  Alignments for each domain:
  == domain 1  score: -7.9 bits;  conditional E-value: 1
  GLTSCR1  67 rlllreskrespseeevmlerllleeeraeleelk 101
              + l+ ++++++++++ ++l++l  ++++ + ++++
   F6HEA6  14 QQLMLQHQQQQQQQQLLLLQQLQKQKQQHQQQQQQ 48 
              22222223344444444444444444443333332 PP

  == domain 2  score: 97.3 bits;  conditional E-value: 3.3e-32
  GLTSCR1   1 dqkavlnPdvktpFasleDAvkRLlPYHvfqepkedeedleka..............deefekvatellkrfqkllnkyrrlllreskrespseeevmlerl 88 
              d+++v++Pd+k+pF+sleDA++RLlPYHv+++++ +e+d   +              d+++ +++ e++++f+k+   ++ + ++++  e +see++m+e++
   F6HEA6 145 DAWRVCHPDFKRPFSSLEDACERLLPYHVVADYEAEEDDRILDsdttgqmpsrsqqwDHNIAAKVAEFTATFEKQALAFNIISRKRAIGEFRSEERLMIEQA 246
              89************************************99966789******************************************************** PP

  GLTSCR1  89 lleeeraeleelk 101
              ll+ee++++ el+
   F6HEA6 247 LLQEEKRAMLELR 259
              *********9987 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 0.36
  GLTSCR1  62 lnkyrrlllreskresps 79 
              + ++  +++ e++r   +
   F6HEA6 276 KLRMAAMVQAEQARAESQ 293
              233333333344444433 PP



Or compare F6HEA6 to CDD or PaperBLAST