N1JF78 has 386 amino acids
Query: DUF3844 [M=104]
Accession: PF12955.11
Description: Domain of unknown function (DUF3844)
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3.9e-38 116.2 4.4 7.2e-38 115.3 4.4 1.5 1 N1JF78
Domain annotation for each sequence (and alignments):
>> N1JF78
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 115.3 4.4 7.2e-38 7.2e-38 1 104 [] 269 377 .. 269 377 .. 0.94
Alignments for each domain:
== domain 1 score: 115.3 bits; conditional E-value: 7.2e-38
DUF3844 1 CfeseeacekatnnCsghGecvkkakskekkecfaCkCkatvekkked.....kkkttkwgGeaCqkkDvsvefvllagftvalvvlvvlaiklLfsvgeee 97
C++s + c ++tnnC+ghGec kk+ +++k +c++C Ckat+++ + k t+wgG+aC+k+D+s f+l+ +f+v+ +++v ++i++Lfs+g e+
N1JF78 269 CHKSLDLCVSSTNNCTGHGECFKKYGDRDKGDCYTCGCKATNDTVTWAkgtkkGWKITYWGGSACHKEDISGAFWLISVFSVTAIAVVGWGIGMLFSIGAES 370
9***************************************99876544455557899********************************************* PP
DUF3844 98 Lpgvlga 104
Lpgv+ga
N1JF78 371 LPGVIGA 377
*****97 PP
Or compare N1JF78 to CDD or PaperBLAST