PaperBLAST – Find papers about a protein or its homologs

 

Align NP_001008537.1 to PF15735 (DUF4683)

NP_001008537.1 has 1516 amino acids

Query:       DUF4683  [M=411]
Accession:   PF15735.9
Description: Domain of unknown function (DUF4683)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   2.6e-130  421.8  15.5   2.6e-130  421.8  15.5    2.7  2  NP_001008537.1  


Domain annotation for each sequence (and alignments):
>> NP_001008537.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  421.8  15.5  2.6e-130  2.6e-130       1     411 []     284     690 ..     284     690 .. 0.93
   2 ?   -1.3   1.8     0.073     0.073      90     129 ..    1168    1207 ..    1121    1257 .. 0.55

  Alignments for each domain:
  == domain 1  score: 421.8 bits;  conditional E-value: 2.6e-130
         DUF4683   1 elsseedvdtvvedddestdesdlgkLkiRYEefqenkaektsls.qqeahykFFPSVvlsnClsrrsalkklvdvtyklqqs.kkesrlklkkk 93 
                     +l+seedvd++++dddest++sd+++LkiRYE+fq+n+++kt+l+ q++a+++FFPSV +++C++r s +    + +++ +q+  ++++++++++
  NP_001008537.1 284 NLFSEEDVDNYMFDDDESTLGSDVCSLKIRYESFQDNVRDKTTLLmQEDAQFNFFPSV-FTTCPKRESKSGA-LKQSSDFSQFkVPDVSIIWGEE 376
                     689****************************************988************.*******443333.3347899999899********* PP

         DUF4683  94 kknlaekkekee.aedkast..kekayiqknalnksisekeevlskdvkvakeaseekalidsansasvefedds...eesedalveikdis..a 180
                     +knl++kk+kee +edk ++  + k + +k+alnk++s +e+++ k+       +++ +l +s   +s  f+dds   e s+da++eikd+s  +
  NP_001008537.1 377 DKNLDKKKGKEEgQEDKGVEkkDGKDNGEKPALNKPCSGTEVEQLKN-------PKQGHLANS-LETSGSFSDDSsfiEISYDAMGEIKDCSryM 463
                     ************99999887557899********************9.......888888755.447999****99*9**************667 PP

         DUF4683 181 klstdksssligskYtLRaKRKvnyete.....DsessekiqnkkeslpkkrkeeedldgskkskKrrKvskkePPviiKYiiiNRFkGrKnmLV 270
                     +++t+++ss+++++Y+LRaKRKv+y+++     Ds+++ek++++ke+lp ++kee+d+++++  kKrrKv++kePPviiKYiiiNRFkG+KnmLV
  NP_001008537.1 464 ARDTNSGSSSSQQNYGLRAKRKVRYSEDylydvDSLEGEKVNERKEWLPVGSKEEDDDEWCP--KKRRKVTRKEPPVIIKYIIINRFKGEKNMLV 556
                     789999********************************************************..******************************* PP

         DUF4683 271 KlgkvdssEesVtLteeklekYkKLAPLKdFWpkvpdsr..atkypvysLtpKks............qkrKaKvkstkkkrikklkniesknikr 351
                     Klgkvd+sE++V+L+e++l+kY KLAPLK+FW+k++++r  +t++++ +  +K+s            ++rK+K+k ++++ri+++ +ie + +++
  NP_001008537.1 557 KLGKVDASETTVNLSENQLNKYAKLAPLKGFWQKKKKQRntNTDSIKTPFSQKQSfepgsfevsflpPARKRKSKLGNRHRIQRIPSIEISASSK 651
                     *************************************9977889*************************************************** PP

         DUF4683 352 tlsfrkrssailsppqpsysaeaeDcdlnysdvmsklGflserslspvelspPrCwspsd 411
                     ++s       +++++++s  +++eD++l             + +l+++ l +P+C+++s+
  NP_001008537.1 652 QISL------CNDQRHAS--NHKEDGGL-------------KGTLKSAPLGAPSCANGSH 690
                     **97......88888888..58999998.............7778888888888888776 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.073
         DUF4683   90 lkkkkknlaekkekeeaedkastkekayiqknalnksise 129 
                      +++k  +  +k  ++++   ++++++++++k++l+ +++ 
  NP_001008537.1 1168 TNNKVSKSRKKSSPSKSGAMNQSSSQKNTRKKSLKGNNKG 1207
                      2222222222223333222222223333333333333333 PP



Or compare NP_001008537.1 to CDD or PaperBLAST