NP_001019411.1 has 188 amino acids
Query: DUF3456 [M=150]
Accession: PF11938.12
Description: TLR4 regulator and MIR-interacting MSAP
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3.6e-12 33.1 0.0 4.3e-11 29.6 0.0 2.2 1 NP_001019411.1
Domain annotation for each sequence (and alignments):
>> NP_001019411.1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 29.6 0.0 4.3e-11 4.3e-11 1 150 [] 48 177 .. 48 177 .. 0.76
Alignments for each domain:
== domain 1 score: 29.6 bits; conditional E-value: 4.3e-11
DUF3456 1 kCeaCkaladeleealskvkpkkevdvggfrldkkgkrkkkkikyakSelrltelleevCekmld.Ynlhkekktskrtlkrlasr...kgvkve 91
+C+aC+a+a ++ ++l+k + k ++ + g++ + Se +t++l+ C++ ++ Y +++ ++ ++ + kg
NP_001019411.1 48 RCDACRAVAYQMGQHLAKAEAKSHTPDS------SGSQ-------ELSESTYTDVLDRTCSQNWQsYGVQEVNQMKRL-----MGPglsKG---- 120
6***************888777766554......4665.......689************666655*****9987664.....44212234.... PP
DUF3456 92 lgikyelwdedsaevnkslkkaCerlvEey.EdeieelykkeqeeedlekkLCserskeC 150
++++ + ++l+ C + + e+ Ed+i e+y++ +e +le LC + ++C
NP_001019411.1 121 PEPSISVMITG-GPWPNRLSMTCFHYLGEFgEDQIYEAYRQGHE--TLEALLCGGTHGSC 177
45555555444.556799*****999988768999999999444..6******9988887 PP
Or compare NP_001019411.1 to CDD or PaperBLAST