PaperBLAST – Find papers about a protein or its homologs

 

Align NP_001036878.1 to PF07165 (DUF1397)

NP_001036878.1 has 227 amino acids

Query:       DUF1397  [M=207]
Accession:   PF07165.16
Description: Protein of unknown function (DUF1397)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-64  203.8  10.4    1.2e-64  203.6  10.4    1.0  1  NP_001036878.1  


Domain annotation for each sequence (and alignments):
>> NP_001036878.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  203.6  10.4   1.2e-64   1.2e-64       4     207 .]      20     219 ..      17     219 .. 0.93

  Alignments for each domain:
  == domain 1  score: 203.6 bits;  conditional E-value: 1.2e-64
         DUF1397   4 leelkkllrekCekntgseeayekieeaaqklveClkslvdltelqeeieeakpkgdldtvfkkyCkkleeakeCveevtakvkpCldeeekeik 98 
                     +++++ ++ ++C+kn++ e+++ ++e+a++++ +Clk+lvdl+ l++eieeakp+g+ld+vfkkyC+k+ ++k C+++v+++v+pC+ +e  +++
  NP_001036878.1  20 FSQITAVVTSQCTKNNA-EDKVPEVEAALRTFGNCLKGLVDLNVLKTEIEEAKPNGALDEVFKKYCDKSAQLKGCISSVLQGVRPCVGNEYANHI 113
                     6789999*********9.99*************************************************************************** PP

         DUF1397  99 kvlkriieelldlvCkkdGdqialfiaekgpeCleekkdniqqClnstfseylskkdlslpklelgekqCselkelraCvvekLekCsestpani 193
                     + +++++++l+d+vC+kdGd+ialfiae gpeC+++k++n+++C+ ++ ++  ++ ++  ++l+l  ++C +++e+++C+v++Le+Cs++tpan+
  NP_001036878.1 114 NDAQNSTNQLIDFVCYKDGDRIALFIAEGGPECFQQKTENLKTCFLNL-KQSFPTVESA-NNLSLV-EKCAKVDEMTSCIVKSLEECSTPTPANM 205
                     ********************************************6555.4444444444.445554.68************************** PP

         DUF1397 194 veslfrfvrketpC 207
                      esl++f+rk++pC
  NP_001036878.1 206 AESLIKFMRKDSPC 219
                     ************** PP



Or compare NP_001036878.1 to CDD or PaperBLAST