NP_001120376.1 has 679 amino acids
Query: DUF3504 [M=162]
Accession: PF12012.12
Description: Domain of unknown function (DUF3504)
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
7e-22 64.4 1.2 1.4e-21 63.4 0.1 2.0 2 NP_001120376.1
Domain annotation for each sequence (and alignments):
>> NP_001120376.1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -1.7 0.2 0.15 0.15 46 88 .. 230 277 .. 215 308 .. 0.51
2 ! 63.4 0.1 1.4e-21 1.4e-21 8 160 .. 392 536 .. 385 538 .. 0.88
Alignments for each domain:
== domain 1 score: -1.7 bits; conditional E-value: 0.15
DUF3504 46 kLsfsnverqskknpreketylrylep.....ekkaeakkrkkeeede 88
+Ls++ + + ++ +++++ + r++ p ++ +++k+k++ +++
NP_001120376.1 230 QLSVEVIATKVSPLSKKETFLPRFRIPtceerDNFIQEQKNKNTMRKT 277
555555555555555533333344444555442233333333332222 PP
== domain 2 score: 63.4 bits; conditional E-value: 1.4e-21
DUF3504 8 eeLWeskqLgadsPivLLntllyfntkyfnlrtveehlkLsfsnverqskknpreketylrylepekkaeakkrkkeeedenkvveqaensenpl 102
e L ++++L+ ++P+ LLn l++ n+ +f lrt e+ +L+ ++++ + +++ + +yl+y e+ +++ ++ ++ + +++ +e p+
NP_001120376.1 392 ENLYKTEILSLHNPSSLLNLLFFNNGIHFALRTKEQ-YDLQWGDITLKIDNKGN---QYLEYNER--RTRTAEHPQNVKV--VKPRMYGTPETPE 478
7899*****************************876.79********9999888...99***999..3333333333333..467899******* PP
DUF3504 103 rCpvkLyelylskcPesvkerkdvFYlqpeksvvpesplWyssqplgkesLesmlkri 160
r p+ y + +P+s+ + FYl p+++ +p +lWy + +g ++++ m++++
NP_001120376.1 479 RDPITAYIKFKNNRPPSMLAPDSPFYLAPNTKYNPGYSLWYRAMKIGIHKMRLMMTSM 536
*******************************************************987 PP
Or compare NP_001120376.1 to CDD or PaperBLAST