NP_001263010.1 has 1702 amino acids
Query: DUF3504 [M=162]
Accession: PF12012.12
Description: Domain of unknown function (DUF3504)
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.3e-69 218.7 2.7 2.3e-69 218.7 2.7 3.2 3 NP_001263010.1
Domain annotation for each sequence (and alignments):
>> NP_001263010.1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -3.2 0.5 0.44 0.44 69 100 .. 304 335 .. 273 341 .. 0.48
2 ! 3.7 0.5 0.0032 0.0032 54 100 .. 433 477 .. 421 485 .. 0.67
3 ! 218.7 2.7 2.3e-69 2.3e-69 1 161 [. 1530 1690 .. 1530 1691 .. 0.94
Alignments for each domain:
== domain 1 score: -3.2 bits; conditional E-value: 0.44
DUF3504 69 ylepekkaeakkrkkeeedenkvveqaensen 100
++e ek+ ++++ +k +e+e+ + +qa+ ++n
NP_001263010.1 304 VTEAEKELARENAEKAAEEEEAEERQAKTPDN 335
22223333333344444443444445555555 PP
== domain 2 score: 3.7 bits; conditional E-value: 0.0032
DUF3504 54 rqskknpreketylrylepekkaeakkrkkeeedenkvveqaensen 100
++ k++ +ek++ +ry++pe++ e +k+k+++++e ++ e+ e++e
NP_001263010.1 433 KC-KQCGDEKNCGFRYRSPEESEEMDKEKENDKAE-ENAEEGEEEEA 477
33.3444489*********8888888888877775.44444444443 PP
== domain 3 score: 218.7 bits; conditional E-value: 2.3e-69
DUF3504 1 vvsrveEeeLWeskqLgadsPivLLntllyfntkyfnlrtveehlkLsfsnverqskknpr......eketylrylepekkaeakkrkkeeed 87
+v+rveEe+LWe+kqLga+sP+vLL+tl++fntk+fnl+tveeh++Lsfs++++++k++++ +++++lr+++p+ a+ rkk
NP_001263010.1 1530 IVTRVEEEHLWECKQLGAHSPHVLLSTLMFFNTKHFNLTTVEEHMQLSFSHIMKHWKRSSQnskvpgSRNVLLRFYPPQAGLDANPRKK---- 1618
689******************************************************999999999999*********55555555554.... PP
DUF3504 88 enkvveqaensenplrCpvkLyelylskcPesvkerkdvFYlqpeksvvpesplWyssqplgkesLesmlkril 161
kv+eq+en+enplrCpv+Lye+ylskcPesvk+r+dvFYlqpe+s+vp+sp+Wys+q+lg+++L++ml+r+
NP_001263010.1 1619 --KVYEQQENEENPLRCPVRLYEFYLSKCPESVKTRNDVFYLQPERSCVPDSPVWYSTQALGQDALQRMLHRVK 1690
..79********************************************************************96 PP
Or compare NP_001263010.1 to CDD or PaperBLAST