NP_001284878.1 has 3446 amino acids
Query: DUF4704 [M=486]
Accession: PF15787.9
Description: Neurobeachin/BDCP, DUF4704 alpha solenoid region
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
4.9e-210 684.4 15.8 4.9e-210 684.4 15.8 2.2 2 NP_001284878.1
Domain annotation for each sequence (and alignments):
>> NP_001284878.1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 684.4 15.8 4.9e-210 4.9e-210 2 486 .] 676 1159 .. 675 1159 .. 0.99
2 ! 1.0 0.6 0.0078 0.0078 326 385 .. 1714 1773 .. 1695 1779 .. 0.89
Alignments for each domain:
== domain 1 score: 684.4 bits; conditional E-value: 4.9e-210
DUF4704 2 advhspealilngvqlvvthsiqsilesvGGiqvLfPLfsqldqaeedeqlegeseadeklcatlleliaelleesetnqqqllrlkGflvls 94
++vh+p+al+l++v++vvthsi+ +l+s+GGiqvLfPLfsqld+a+e g+ ++d++lc++ll++i+el+e+s+t+qq++++++Gflv+s
NP_001284878.1 676 YFVHTPHALMLQDVKAVVTHSIHCTLNSIGGIQVLFPLFSQLDMAHEGL---GDIKRDPTLCSKLLGFICELVETSQTVQQHMIQNRGFLVIS 765
89********************************************996...88889************************************ PP
DUF4704 95 flLqsvspkhLtlevlsalksllkvlksl..anselLlkdlvdsillnpklWiytdyeVQkeLysyLatdfvsdkkiltnlrrvstVlrlldi 185
f+Lq++s++hLtlevl ++++l+k+l+++ ans+lLlk+l+d++l+np+lWiyt+ +VQ +LysyLat+f+sd++i++n+rrvstVl+++++
NP_001284878.1 766 FMLQRSSREHLTLEVLGSFLNLTKYLVTClsANSDLLLKQLLDHVLFNPALWIYTPANVQARLYSYLATEFLSDTQIYSNVRRVSTVLQTVHT 858
*****************************9778************************************************************ PP
DUF4704 186 lkqfYwvenaksksgvtskslleeRpsqeeilklrallLslieqlvrksseisesevkalinyletvqddenvedvLelvirllseksasfle 278
lk++Ywv+n++ ksg+++k+l+++Rp+q++il++ra++L +++ql++ +++++e+e+++++nyl+t+++den++dvL+++i+l+se+++s+++
NP_001284878.1 859 LKYYYWVVNPRAKSGIIPKGLDGPRPAQKDILAIRAYILLFLKQLIMIGNGVKEDELQSILNYLTTMHEDENLHDVLQMLISLMSEHPSSMVP 951
********************************************************************************************* PP
DUF4704 279 aldskggieiflkLLsreseaiRllaLkllgklllrspvkrksevmeaknlfsliserLllfseeltdktynvLfevllekaspkivlekhse 371
a+d k+g++ ++kLL++es++iRl+aLkllg++l+rs++krk++vm+++nl++l++erLll++e+l+++tynvL+e+++e++s++i++++h e
NP_001284878.1 952 AFDVKHGVRSIFKLLAAESQLIRLQALKLLGFFLSRSTHKRKYDVMSPHNLYTLLAERLLLYEESLSLPTYNVLYEIMTEHISQQILYTRHPE 1044
********************************************************************************************* PP
DUF4704 372 pekssklelPqilkviakllsqskdses.ielrkkiLsdllvLlksnrenrrallqmsvWqewLvalaklaeikeeeeseikelvielfkvLl 463
pe++++le+P+ilkv+a+l++qsk++es i+++k++L+d++ L++snrenrr++lqmsvWqewL+a+a+++++++ee ++i+++v++lf++Ll
NP_001284878.1 1045 PESHYRLENPMILKVVATLIRQSKQTESlIDVKKLFLQDMTLLCNSNRENRRTVLQMSVWQEWLIAMAYIHPKSSEE-QKISDMVYSLFRMLL 1136
*****************************************************************************.*************** PP
DUF4704 464 vhalktekgGwrvlvdtlailhs 486
+ha+k+e+gGwrv+vdtlai+hs
NP_001284878.1 1137 HHAIKHEYGGWRVWVDTLAIVHS 1159
*********************96 PP
== domain 2 score: 1.0 bits; conditional E-value: 0.0078
DUF4704 326 aknlfsliserLllfseeltdktynvLfevllekaspkivlekhsepekssklelPqilk 385
++ ++e+L + +ee + n + l++++++ + e++ +++ + + Pqil
NP_001284878.1 1714 EQQKSQEVAEELPQKPEEQVVAIVNQVLDTLVDDTVKAVAAEQTTQTSPAPEEQSPQILA 1773
455566799*************************************************96 PP
Or compare NP_001284878.1 to CDD or PaperBLAST