NP_001290387.1 has 437 amino acids
Query: ABC_transp_aux [M=288]
Accession: PF09822.16
Description: ABC-type uncharacterized transport system
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.7e-16 46.3 0.0 1.2e-14 40.3 0.0 2.1 2 NP_001290387.1
Domain annotation for each sequence (and alignments):
>> NP_001290387.1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 40.3 0.0 1.2e-14 1.2e-14 18 121 .. 25 117 .. 6 124 .. 0.87
2 ! 3.8 0.0 0.0015 0.0015 221 272 .. 180 225 .. 161 240 .. 0.75
Alignments for each domain:
== domain 1 score: 40.3 bits; conditional E-value: 1.2e-14
ABC_transp_aux 18 ewsfleelseqydveevdldsveeipeeldvLviakPkedlseeelyaldqflmnGGkllvfvdpvaveldslseagpalprdsnLedlLekyGv 112
+s+ ++l+ + ++++++ + ++e +++++ + a+P+e+++ +e + l+++l GG ++v++ e + d+n++ lLe+yG+
NP_001290387.1 25 YKSMQKKLRSNWKIQSLKDEITSEKLNGVKLWITAGPREKFTAAEFEILKKYLDTGGDVFVMLGEG-GE------S----RFDTNINFLLEEYGI 108
6788999*************999999***************************************2.22......2....23************* PP
ABC_transp_aux 113 rinpdlvld 121
+n+d v+
NP_001290387.1 109 MVNNDAVVR 117
******987 PP
== domain 2 score: 3.8 bits; conditional E-value: 0.0015
ABC_transp_aux 221 plavllegkftsafa.nrpk.elk.ssakeskiivvgDgdvlsnqvgkplplgfd 272
++avl +g++ f+ nrp ++ s+++ +k+ v g+ ++s+q+ +d
NP_001290387.1 180 AVAVLSTGSVC--FPlNRPIlAFYhSKNQGGKLAVLGSCHMFSDQY-------LD 225
57888888865..4414442466688889*****************.......22 PP
Or compare NP_001290387.1 to CDD or PaperBLAST