NP_001307129.1 has 450 amino acids
Query: DUF3493 [M=73]
Accession: PF11998.12
Description: Low psii accumulation1 / Rep27
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
6.6e-27 79.9 0.5 1.8e-26 78.5 0.5 1.8 1 NP_001307129.1
Domain annotation for each sequence (and alignments):
>> NP_001307129.1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 78.5 0.5 1.8e-26 1.8e-26 2 73 .] 181 258 .. 180 258 .. 0.97
Alignments for each domain:
== domain 1 score: 78.5 bits; conditional E-value: 1.8e-26
DUF3493 2 ekkarLraEakaPfRglRlflYlafaaSaliGalifllrllagr......peleealqnlaiqvgvvalmvfLlrler 73
+++ +L +E++aPfRg+R+f+Y+a++a+a+i+++++++rl+ + p+l e+ n ai++g+++++v+L+++e+
NP_001307129.1 181 RRDLKLISEVQAPFRGVRRFFYVALTAAAGISTFFTIPRLVLAVrggdgaPDLLETAGNAAINIGGIVVLVALYFWEN 258
5788*************************************9999*******************************96 PP
Or compare NP_001307129.1 to CDD or PaperBLAST