NP_001309866.1 has 958 amino acids
Query: DUF4962 [M=476]
Accession: PF16332.9
Description: Domain of unknown function (DUF4962)
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.6e-11 28.7 5.4 2.6e-11 28.7 5.4 2.1 3 NP_001309866.1
Domain annotation for each sequence (and alignments):
>> NP_001309866.1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -2.2 0.0 0.061 0.061 131 176 .. 37 84 .. 25 92 .. 0.78
2 ! 28.7 5.4 2.6e-11 2.6e-11 255 414 .. 150 314 .. 119 353 .. 0.80
3 ? -2.3 0.1 0.065 0.065 225 248 .. 780 803 .. 736 836 .. 0.73
Alignments for each domain:
== domain 1 score: -2.2 bits; conditional E-value: 0.061
DUF4962 131 aklkksHPrilllkkdwedfikrnkdnpea..kayikkaekllkkple 176
+ + +sHP ++ +++ ++ r ++++e+ + + + +++l++ple
NP_001309866.1 37 NANYDSHPMLYFSRAEVAELQLRAASSHEHiaARLTEAVHTMLSSPLE 84
556678***********9999999998886215567777888899987 PP
== domain 2 score: 28.7 bits; conditional E-value: 2.6e-11
DUF4962 255 naatllsllalaYDsfYdllteeekkllkkeikergkkiyk.efvnrlenhiadnHvWqmtlRiltlaalav.vgelpeAdkWldyvYevWvaRf 347
a l a+aYD Y++l+++++++++++i + + +y+ ++ + nH + lt + + + g l+eA W++ v + +
NP_001309866.1 150 PLAHSLVGFATAYDFLYNYLSKTQQEKFLEVIANASGYMYEtSYRRGWGFQYLHNHQPTNCMALLTGSLVLMnQGYLQEAYLWTKQVLTIMEKSL 244
567778899*******************************7368999*********99999988886654442578******************* PP
DUF4962 348 PvL..nkDGgWHngdsYfkvnlrtlievpalyselsGvdfFsdpWyknlalyvlysq.ppfsksagnGds 414
L +DG+ ++g +Y + +r+l + l ++ +++F +pW+k ++ + p f ++ ds
NP_001309866.1 245 VLLreVTDGSLYEGVAYGSYTTRSLFQYMFLVQRHFNINHFGHPWLKQHFAFMYRTIlPGFQRTVAIADS 314
9998789****************************************99888654441345555555555 PP
== domain 3 score: -2.3 bits; conditional E-value: 0.065
DUF4962 225 tkDkkyakeaikrllellsmdksk 248
Dk+ ++eai+r+ +++ ++++
NP_001309866.1 780 FSDKRQTEEAIDRIFAISQQQQQQ 803
469999999999999998877433 PP
Or compare NP_001309866.1 to CDD or PaperBLAST