NP_001320709.1 has 1439 amino acids
Query: DUF3223 [M=75]
Accession: PF11523.12
Description: Protein of unknown function (DUF3223)
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3.5e-28 84.3 0.5 9.7e-28 82.9 0.1 2.1 2 NP_001320709.1
Domain annotation for each sequence (and alignments):
>> NP_001320709.1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -3.9 0.0 1 1 52 68 .. 1210 1226 .. 1206 1226 .. 0.76
2 ! 82.9 0.1 9.7e-28 9.7e-28 1 75 [] 1333 1405 .. 1333 1405 .. 0.97
Alignments for each domain:
== domain 1 score: -3.9 bits; conditional E-value: 1
DUF3223 52 kgsrCFfvvrkDGtked 68
s+CF k+G ++d
NP_001320709.1 1210 SPSQCFLKAAKEGVRDD 1226
4699**99999888776 PP
== domain 2 score: 82.9 bits; conditional E-value: 9.7e-28
DUF3223 1 kaiLhryedgeelneedekvllekllkyHpeaekKigagikaitvdkhpdfkgsrCFfvvrkDGtkedFSyrkCv 75
k+iLh+ye++e lne de ++ + +l+ Hp++ +Kig+g+k i+v+k +++++s CF vvr DGt edFSy+kCv
NP_001320709.1 1333 KRILHSYEINELLNERDEGLVKM-VLQLHPNSVEKIGPGVKGIRVAK-SKHGDSCCFEVVRIDGTFEDFSYHKCV 1405
78*****************9999.*********************98.688***********************8 PP
Or compare NP_001320709.1 to CDD or PaperBLAST