PaperBLAST – Find papers about a protein or its homologs

 

Align NP_080543.2 to PF07933 (DUF1681)

NP_080543.2 has 275 amino acids

Query:       DUF1681  [M=158]
Accession:   PF07933.18
Description: Protein of unknown function (DUF1681)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.3e-65  205.3   0.0    2.9e-65  205.0   0.0    1.1  1  NP_080543.2  


Domain annotation for each sequence (and alignments):
>> NP_080543.2  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  205.0   0.0   2.9e-65   2.9e-65       1     158 []       7     164 ..       7     164 .. 0.95

  Alignments for each domain:
  == domain 1  score: 205.0 bits;  conditional E-value: 2.9e-65
      DUF1681   1 iervllvakevhvYkippltsskgyraadWtakepiwtgrlrvvekgkkvdikLedkktgelfaaapve.tkeaavekvlDSsRyFvlrvedekgrka 97 
                  +e+vl+v+++v+vY+ipp++s++gyra+dW+ ++p wtgrlr+++kgk + ikLedk +gelfa+apve     ave+v+DSsRyFv+r++d +gr+a
  NP_080543.2   7 YESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKIAYIKLEDKVSGELFAQAPVEqYPGIAVETVTDSSRYFVIRIQDGTGRSA 104
                  799*****************************************************************9755689*********************** PP

      DUF1681  98 flGigFeeRsdafdfnvalqdaekrlkkekeaeekekeeeekkekkdysLkeGetikinlg 158
                  f+GigF++R dafdfnv+lqd++k++k+e+e ++ e++e +++ k d+ +keG+tik+++g
  NP_080543.2 105 FIGIGFTDRGDAFDFNVSLQDHFKWVKQETEISK-ESQEMDNRPKLDLGFKEGQTIKLSIG 164
                  ********************************97.566666666**************986 PP



Or compare NP_080543.2 to CDD or PaperBLAST