PaperBLAST – Find papers about a protein or its homologs

 

Align NP_084294.1 to PF05255 (UPF0220)

NP_084294.1 has 158 amino acids

Query:       UPF0220  [M=166]
Accession:   PF05255.15
Description: Uncharacterised protein family (UPF0220)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.2e-58  182.6   4.2    2.5e-58  182.4   4.2    1.0  1  NP_084294.1  


Domain annotation for each sequence (and alignments):
>> NP_084294.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  182.4   4.2   2.5e-58   2.5e-58       3     166 .]       6     157 ..       4     157 .. 0.96

  Alignments for each domain:
  == domain 1  score: 182.4 bits;  conditional E-value: 2.5e-58
      UPF0220   3 drlfrfskpelklensekrravgvylaGaLfalgfwllidaavvskkanasdvhvtfvdwipficstlgmlivnsieksrlsgds.....lgssgssv 95 
                  d+ fr++++e+ +++se+r++v++++aG+Lf++g+w++idaavv++k      +++++++ ++++stl+++++n++++++++gds     lg++g   
  NP_084294.1   6 DN-FRWPECEC-IDWSERRNTVASVVAGILFFTGWWIMIDAAVVYPKP----EQLNHAFHTCGVFSTLAFFMINAVSNAQVRGDSyesgcLGRTG--- 94 
                  78.********.***********************************9....9********************************8888888888... PP

      UPF0220  96 awkarvvLflGfallagglagsvvvlilkYvvkdytefptlgmGvanvlqNaliflssvvlwvgqnvedeY 166
                     arv+Lf+Gf+l++g+l++s+++l+ +Yv+++ +    +++G+a+++qNalif+s++++++g+ +e+ +
  NP_084294.1  95 ---ARVWLFIGFMLMFGSLIASMWILFGAYVTQNID----VYPGLAVFFQNALIFFSTLIYKFGR-TEELW 157
                  ...*****************************9995....9************************.99988 PP



Or compare NP_084294.1 to CDD or PaperBLAST