PaperBLAST – Find papers about a protein or its homologs

 

Align NP_176963.2 to PF05346 (DUF747)

NP_176963.2 has 624 amino acids

Query:       DUF747  [M=315]
Accession:   PF05346.15
Description: Eukaryotic membrane protein family
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   1.5e-100  322.9   7.7   1.9e-100  322.6   7.7    1.1  1  NP_176963.2  


Domain annotation for each sequence (and alignments):
>> NP_176963.2  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  322.6   7.7  1.9e-100  1.9e-100       3     314 ..     305     610 ..     303     611 .. 0.96

  Alignments for each domain:
  == domain 1  score: 322.6 bits;  conditional E-value: 1.9e-100
       DUF747   3 ssekadllklllilvsviilsklDaSrlYHsirgqsviKLyvifnvLEvaDkLlsslgqdildalfstat........kskskllrlillfilalvyv 92 
                  +se++dl ++l++++ +i+l ++D+S +YH+irgqs+iKLyv++n+LE++D+L++s++ d++ alfs+a+        k + +++r++  ++l++++ 
  NP_176963.2 305 ASELSDLACFLVLATGTILLGRTDISLIYHMIRGQSTIKLYVVYNILEIFDRLCQSFCGDVFGALFSSAKglsisppeKLRFSTWRFVSDLALTMAAS 402
                  6899******************************************************************7777766546799*************** PP

       DUF747  93 vlHslvllyqvvtLnVavnSysnaLltLLlsnqfvEiKssVFKkfekenlfqltcaDvvERfqlllllliialrnlvelsssssseeellgellspll 190
                  +lHs++ll q++tL+ ++ +++naLl+LL+sn+f+EiKssVFK+f+k+n++ l++aD +ERf+++++l+ ++++n++e      se +++g+++++++
  NP_176963.2 403 ILHSFILLAQAITLSTCIVAHNNALLALLVSNNFAEIKSSVFKRFSKDNIHGLVYADSIERFHISAFLVSVLAQNILE------SEGAWFGNFIYNAT 494
                  ******************************************************************************......799*********** PP

       DUF747 191 lvlgsEvlvDwlKHafitkFNkikpsvYrkfldvlakdllssrkkkafvdqseklarrlGlpvlplavlfirvllqtlkmllatslkllslltallll 288
                  +v+++E+++D++KH+f++kFN+ikp +Y++fl+ l++++l+ r +          +  l++++l+ a+++irvl+++++++l +s   +++l++++l+
  NP_176963.2 495 TVFFCEMMIDIIKHSFLAKFNDIKPIAYSEFLQALCEQTLNIRPE--------DRKTNLTFVPLAPACVVIRVLTPVYAAHLPYSPLPWRMLWMVILF 584
                  ****************************************98555........45689**************************************** PP

       DUF747 289 llvflillllklllgilllkvarkrv 314
                  ++++++l++lk+l+g+ l+k+a++++
  NP_176963.2 585 VITYIMLTSLKVLIGMGLRKHATWYI 610
                  **********************9976 PP



Or compare NP_176963.2 to CDD or PaperBLAST