PaperBLAST – Find papers about a protein or its homologs

 

Align NP_177684.1 to PF05142 (DUF702)

NP_177684.1 has 346 amino acids

Query:       DUF702  [M=151]
Accession:   PF05142.16
Description: Domain of unknown function (DUF702)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.3e-67  211.2   4.5    5.3e-67  211.2   4.5    2.3  2  NP_177684.1  


Domain annotation for each sequence (and alignments):
>> NP_177684.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.2     0.016     0.016      46      63 ..      61      78 ..      52     112 .. 0.43
   2 !  211.2   4.5   5.3e-67   5.3e-67       2     150 ..     122     284 ..     121     285 .. 0.75

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.016
       DUF702 46 rrerqqqlaalqaqaaea 63
                 ++e+qqq++++q+ +a a
  NP_177684.1 61 QQEHQQQQQQQQHASAPA 78
                 223222222222222222 PP

  == domain 2  score: 211.2 bits;  conditional E-value: 5.3e-67
       DUF702   2 gisCqdCgnqakkdCahrrCRtCCksrgfdCatHvkstwvpaakrrerqqqlaalqaqaaeaeaea......assasssekskrpree......saaa 87 
                  g++CqdCgnqakkdC h+rCRtCCksrgf+C+tHvkstwvpaakrrer  qla+lq+++a++++++      ++s +++++ k +         +++ 
  NP_177684.1 122 GMNCQDCGNQAKKDCPHMRCRTCCKSRGFHCQTHVKSTWVPAAKRRERLAQLASLQHHSASSRETQnakrlrEASGGDNNDDKDHS-GgggsalANT- 217
                  799***************************************************99998877666655444222223333333333.2233222111. PP

       DUF702  88 sassts..attsks.....eslpeevsseAvFrcvrvsavddgee..evaYqtavkigGhvfkGiLydqGle 150
                          +++s+s     ++lp+ev+s+A+Frcvrvs+++++e+   +aYqtav+igGh+fkGiLydqG+e
  NP_177684.1 218 -----RvvNANSNSglevsQHLPPEVNSPAIFRCVRVSSIEEDEDdqAYAYQTAVNIGGHIFKGILYDQGPE 284
                  .....122223233344436********************875443389*********************98 PP



Or compare NP_177684.1 to CDD or PaperBLAST