PaperBLAST – Find papers about a protein or its homologs

 

Align NP_250534.1 to PF02965 (Met_synt_B12)

NP_250534.1 has 1234 amino acids

Query:       Met_synt_B12  [M=273]
Accession:   PF02965.22
Description: Vitamin B12 dependent methionine synthase, activation domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   4.1e-130  419.1   0.0     7e-130  418.4   0.0    1.4  1  NP_250534.1  


Domain annotation for each sequence (and alignments):
>> NP_250534.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  418.4   0.0    7e-130    7e-130       1     273 []     945    1216 ..     945    1216 .. 0.98

  Alignments for each domain:
  == domain 1  score: 418.4 bits;  conditional E-value: 7e-130
  Met_synt_B12    1 dleelveyidWtpffqawelkgkypkiledekvgeeakklfkdAqamLkkiieekllkakavvglfpansv.gddievyadesrseelatlhtLr 94  
                    dl+ l+eyidWtpff +w+l+gkyp+il+de+vge+a++lf+dAqamLkk+i+ekl+ka+av+g++pan+v +dd+evy  +   e+latlh+Lr
   NP_250534.1  945 DLAVLAEYIDWTPFFISWDLAGKYPRILTDEVVGEAATSLFNDAQAMLKKLIDEKLIKARAVFGFWPANQVeHDDLEVYGADG--ETLATLHHLR 1037
                    57889*****************************************************************956*****95555..679******* PP

  Met_synt_B12   95 qqaekeegepnlclaDfvapkesgvkDyiGlfavtaglgieelakefeaeeDdYsailvkalaDrLaeAfaellhekvrkelWgyakdeklsnee 189 
                    qq+ k++g+pnl+laDfvapkesgv+DyiG+f++tag+g+ee+ak++ea+ DdY++i+vkalaDrLaeA+ae+lhe+vrke+Wgya+de+l+ne+
   NP_250534.1 1038 QQTIKPDGKPNLSLADFVAPKESGVRDYIGGFITTAGIGAEEVAKAYEAKGDDYNSIMVKALADRLAEACAEWLHERVRKEYWGYARDEHLDNEA 1132
                    *********************************************************************************************** PP

  Met_synt_B12  190 likekYqGiRpApGYpacpdhsekktlfelldaeekigieLteslamtPaasvsGlyfahpeskyFavgkiekdqvedyakrkg 273 
                    like+Y GiRpApGYpacpdh+ek tlfelld +   g++Lte++am Paa+vsG+yfahp+++yFavgki+kdqve y +rkg
   NP_250534.1 1133 LIKEQYVGIRPAPGYPACPDHTEKGTLFELLDPQGLSGVSLTEHYAMFPAAAVSGWYFAHPQAQYFAVGKIDKDQVERYSQRKG 1216
                    **********************************************************************************97 PP



Or compare NP_250534.1 to CDD or PaperBLAST