PaperBLAST – Find papers about a protein or its homologs

 

Align NP_496290.2 to PF06840 (PDC10_C)

NP_496290.2 has 215 amino acids

Query:       PDC10_C  [M=90]
Accession:   PF06840.15
Description: Programmed cell death protein 10, C-terminal
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.8e-35  106.6   0.4    4.5e-35  105.9   0.4    1.4  1  NP_496290.2  


Domain annotation for each sequence (and alignments):
>> NP_496290.2  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.9   0.4   4.5e-35   4.5e-35       1      89 [.      71     160 ..      71     179 .. 0.94

  Alignments for each domain:
  == domain 1  score: 105.9 bits;  conditional E-value: 4.5e-35
      PDC10_C   1 vnlneslLrlagssdveeyiierkee..efqelnkkaraLkkiLsriPdeindRkkfLetikeiAsaikklLdavnevskkiqekeekkal 89 
                  vnl+es+Lr++++s ++++i++ +e+  +++el+k+a++L+++Lsr+P+e++dR++fLetik iAs+ikklL+a+n+v++ ++  +++ a+
  NP_496290.2  71 VNLQESYLRMHDTSPTNDLIVSGYEQnaDYKELTKRAIELRRVLSRVPEEMSDRHAFLETIKLIASSIKKLLEAINAVYRIVPL-TAQPAV 160
                  8*********************9998779***************************************************9998.455555 PP



Or compare NP_496290.2 to CDD or PaperBLAST