NP_497939.2 has 2507 amino acids
Query: DUF4704 [M=486]
Accession: PF15787.9
Description: Neurobeachin/BDCP, DUF4704 alpha solenoid region
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.3e-183 597.2 9.2 1.3e-183 597.2 9.2 2.4 3 NP_497939.2
Domain annotation for each sequence (and alignments):
>> NP_497939.2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -1.3 0.0 0.04 0.04 144 186 .. 198 240 .. 164 243 .. 0.79
2 ! 597.2 9.2 1.3e-183 1.3e-183 2 486 .] 540 1024 .. 539 1024 .. 0.99
3 ? -2.0 0.0 0.066 0.066 151 198 .. 1454 1502 .. 1451 1524 .. 0.78
Alignments for each domain:
== domain 1 score: -1.3 bits; conditional E-value: 0.04
DUF4704 144 WiytdyeVQkeLysyLatdfvsdkkiltnlrrvstVlrlldil 186
++dy +Q+e++s + + +++++l+ rv + ++ldil
NP_497939.2 198 LSHCDYDLQNEIWSLFLAVMKKSNRNLEACTRVGLISKVLDIL 240
4678888888888888888888888888888887777887776 PP
== domain 2 score: 597.2 bits; conditional E-value: 1.3e-183
DUF4704 2 advhspealilngvqlvvthsiqsilesvGGiqvLfPLfsqldqaeedeqlegeseadeklcatlleliaelleesetnqqqllrlkGflvlsflL 97
++v++p+a++++gv++++thsi+++l+svGGiq+L+PLf+q+d +++++ ++ +d ++c+tll+lia ll++s+++qqql+++kGfl++s +L
NP_497939.2 540 YFVQIPHAVMKEGVEVITTHSIHKSLQSVGGIQILLPLFAQIDLPSSND---NS--IDGEVCQTLLSLIALLLSSSQSSQQQLFHSKGFLIISSCL 630
899*******************************************997...44..99************************************** PP
DUF4704 98 qsvspkhLtlevlsalksllkvlkslanselLlkdlvdsillnpklWiytdyeVQkeLysyLatdfvsdkkiltnlrrvstVlrlldilkqfYwve 193
q++sp+hL+++vl++l +++k+l +++++ +Llk+l+d+il+npklWi++++eVQ++Ly+yLatdf+++++++++lrrv+tV++++++lk+fYw++
NP_497939.2 631 QKASPSHLSMKVLEQLIHIAKFLLRCPAGGPLLKHLFDYILFNPKLWIRARPEVQVHLYQYLATDFLANNNFSQMLRRVPTVIEMCHTLKHFYWLA 726
************************************************************************************************ PP
DUF4704 194 naksksgvtskslleeRp...sqeeilklrallLslieqlvrks......seisesevkalinyletvqddenvedvLelvirllseksasfleal 280
+++ s++t + eRp ++ +i+++r+ +L++i++++ +s + ++++ev++l+n+l+tv++d+n++dvL+lv+rll+e++a +++a+
NP_497939.2 727 LPQTVSDYTIE----ERPenfATADIVAIRSSILTFINRIIIASagpeeeERVRDQEVHTLLNLLATVREDDNLYDVLALVTRLLAEHPAIMIPAI 818
99999999888....89988899**************************99********************************************* PP
DUF4704 281 dskggieiflkLLsreseaiRllaLkllgklllrspvkrksevmeaknlfsliserLllfseeltdktynvLfevllekaspkivlekhsepekss 376
d+++++ i+++LL++++e+iR++aLk+lg++l+rs++krk+e+m+ +nlfsli+erLl +++ l+++tynvL e+l+e+++p++++ h++++ ++
NP_497939.2 819 DKNKALGIIFNLLAAPNELIRIPALKILGFFLSRSTLKRKTESMGNQNLFSLIGERLLSHKKVLSLPTYNVLLEILVEQMTPTFTYACHQPAQPEW 914
************************************************************************************************ PP
DUF4704 377 klelPqilkviakllsqskdses.ielrkkiLsdllvLlksnrenrrallqmsvWqewLvalaklaeikeeeeseikelvielfkvLlvhalktek 471
k+e+P++lkvia+++sq+++se+ ++++k++L d+++L+++++enrr++lqmsvWq+wL++la++ +++e++ +e++elv+e+f++Ll+hal++e+
NP_497939.2 915 KFENPHLLKVIAHVISQCEESENiVQIKKCFLIDIINLCRESKENRRTILQMSVWQDWLIGLAYVFHTTESQ-NEVSELVWEAFSILLHHALRNEY 1009
************************************************************************.*********************** PP
DUF4704 472 gGwrvlvdtlailhs 486
gGwrv+vdtlai+hs
NP_497939.2 1010 GGWRVWVDTLAIAHS 1024
************996 PP
== domain 3 score: -2.0 bits; conditional E-value: 0.066
DUF4704 151 VQkeLysyLatdfvsdkkiltnlrrv.stVlrlldilkqfYwvenaksk 198
+Qk L+ +++++d+k+l++lr+ ++V++l+ +l+ w+ + +++
NP_497939.2 1454 LQKTLLGTHGQEIMNDTKVLETLRNRnASVIELVMLLCSQEWQTSLQKH 1502
6999999999999999999999986414688888888777776665555 PP
Or compare NP_497939.2 to CDD or PaperBLAST