PaperBLAST – Find papers about a protein or its homologs

 

Align NP_569999.1 to PF14687 (DUF4460)

NP_569999.1 has 491 amino acids

Query:       DUF4460  [M=110]
Accession:   PF14687.10
Description: Domain of unknown function (DUF4460)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.9e-33   99.7   0.0      1e-32   98.7   0.0    1.6  1  NP_569999.1  


Domain annotation for each sequence (and alignments):
>> NP_569999.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.7   0.0     1e-32     1e-32       2     110 .]      16     122 ..      15     122 .. 0.97

  Alignments for each domain:
  == domain 1  score: 98.7 bits;  conditional E-value: 1e-32
      DUF4460   2 srrlskkelrnaLrkFYlavhPDlfgqyPkekkvNeeSLklLnsyleelkkeeeksikpekkkLtFyvreseseeeekeskfklvsiqldensrdvke 99 
                  +rrl +++l++aLr+FY+a+++D +++ P+ek+vNeeSL+lL+s+le+l+ +++ s+ p + +L+Fy+++  s+e+ +++ ++lv++q+d+++ d+++
  NP_569999.1  16 CRRLLSTDLVTALRPFYQAIRTDGLAHNPAEKRVNEESLRLLCSHLESLTGPSA-SCLPPDGHLEFYIPS-GSDESGSRVVSRLVRVQVDRSLLDPRA 111
                  7999************************************************76.9**************.999************************ PP

      DUF4460 100 tildilkscsl 110
                  +i++il+sc+l
  NP_569999.1 112 VICQILRSCKL 122
                  *********96 PP



Or compare NP_569999.1 to CDD or PaperBLAST