PaperBLAST – Find papers about a protein or its homologs

 

Align NP_570268.1 to PF05077 (DUF678)

NP_570268.1 has 72 amino acids

Query:       DUF678  [M=74]
Accession:   PF05077.16
Description: Protein of unknown function (DUF678)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.9e-37  111.8   6.9    7.5e-37  111.7   6.9    1.0  1  NP_570268.1  


Domain annotation for each sequence (and alignments):
>> NP_570268.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.7   6.9   7.5e-37   7.5e-37       1      74 []       1      71 [.       1      71 [. 0.95

  Alignments for each domain:
  == domain 1  score: 111.7 bits;  conditional E-value: 7.5e-37
       DUF678  1 mdstagakkrrkrkpkttvededdcvtCSsCqSkLvkvsdvskvslselkvagkgntlsCaACgSeLrlLrdla 74
                 md tag k+ +krkpktt++ +ddc+tCSsC+SkLvk+sd++ vsls++kv+gkgntlsC+ACgSeLr+L+d++
  NP_570268.1  1 MD-TAGSKR-KKRKPKTTIK-DDDCMTCSSCYSKLVKMSDITTVSLSQYKVVGKGNTLSCSACGSELRTLNDFV 71
                 56.588887.9********9.689************************************************97 PP



Or compare NP_570268.1 to CDD or PaperBLAST