NP_609365.3 has 438 amino acids
Query: TRAPPC13_N [M=159]
Accession: PF06159.19
Description: Trafficking protein particle complex subunit 13, N-terminal
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2e-54 170.2 0.1 2.6e-53 166.6 0.0 2.5 3 NP_609365.3
Domain annotation for each sequence (and alignments):
>> NP_609365.3
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 166.6 0.0 2.6e-53 2.6e-53 1 159 [] 9 169 .. 9 169 .. 0.93
2 ? -1.9 0.0 0.18 0.18 80 111 .. 181 221 .. 174 236 .. 0.61
3 ? 0.2 0.0 0.041 0.041 61 97 .. 307 344 .. 285 365 .. 0.81
Alignments for each domain:
== domain 1 score: 166.6 bits; conditional E-value: 2.6e-53
TRAPPC13_N 1 hllslkvlRlsrPslasqkplkadlpesslasllkesasseaa..addkfilselLtLPqsfGsiylGetFscylcvnnesskvvrsvrikaelqtps 96
hl++lkv+Rl rP+l+ p+ + +p+++++ ++++++s ++ ++++++++L+LPqsfGsiylGetF++y+cv+n++ + v+ v++ka+lq+++
NP_609365.3 9 HLVALKVMRLMRPTLVGLGPVVTCEPTDLVQRFSSSQESDGMSgaCAETLAAGQVLLLPQSFGSIYLGETFASYICVHNTTPNPVECVTVKADLQSNT 106
89****************9999878888888887777666555677799************************************************* PP
TRAPPC13_N 97 qrleLsek.ekkaskelepgetldkivrhelkelGtHiLvvtvsYteaasgevrtfrklykFqv 159
+r++Ls + ++k+ + l pg t+d+++r+e+ke+GtHiLv++v+Y+ +++g ++++rk++kFqv
NP_609365.3 107 SRINLSMHeNAKSPVVLPPGGTIDDVIRYEVKEIGTHILVCEVNYS-TPAGYAQSLRKFFKFQV 169
*****98866678899******************************.***************98 PP
== domain 2 score: -1.9 bits; conditional E-value: 0.18
TRAPPC13_N 80 skvvrsvrikaelqtpsqr......leLsek...ekkaske 111
+ ++++ ++a++q +++ +eL+ + + ++ ++
NP_609365.3 181 NAEIDEIYLEAQIQNVTTSpfclekVELDGSedySVTPLNT 221
56788999999999888776444444443333333334444 PP
== domain 3 score: 0.2 bits; conditional E-value: 0.041
TRAPPC13_N 61 GsiylGetFscylcvnnesskvvr.svrikaelqtpsq 97
+i +G F+ v n+s++ ++ +vr+ a +sq
NP_609365.3 307 NTIKIGTIFTFNCRVTNTSEHPMKlNVRLAAKFSPDSQ 344
57899*************98776548888888777766 PP
Or compare NP_609365.3 to CDD or PaperBLAST