PaperBLAST – Find papers about a protein or its homologs

 

Align NP_611498.1 to PF12018 (FAP206)

NP_611498.1 has 576 amino acids

Query:       FAP206  [M=272]
Accession:   PF12018.12
Description: Domain of unknown function
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.2e-70  223.9   5.5    1.2e-70  223.9   5.5    1.9  2  NP_611498.1  


Domain annotation for each sequence (and alignments):
>> NP_611498.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.1     0.079     0.079       2      34 ..      94     126 ..      93     137 .. 0.80
   2 !  223.9   5.5   1.2e-70   1.2e-70       1     271 [.     216     491 ..     216     492 .. 0.97

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.079
       FAP206   2 leealpatseaiekeleeaqelaykytallekl 34 
                  le+  ++ +e++++el+ +++ + +y +   k+
  NP_611498.1  94 LEYVKKKYEEKFQTELQLLIKDILQYPETCSKV 126
                  666678889999999999999999999988887 PP

  == domain 2  score: 223.9 bits;  conditional E-value: 1.2e-70
       FAP206   1 ileealpatseaiekeleeaqelaykytallekl.....keetsksevseeqlerlkqalvnvrqyeaflkiLlsdvekcaqeveslqkrleaelekl 93 
                  +le+a+++t++a+++++ +a ++ ++  a+l++l     k+et  ++v++e+l+rl+q+ +++ +++++l++L+++++k+ + +e+++kr+++++ k+
  NP_611498.1 216 DLEMAQKNTEAAFAASMGRAVKMQSTCQAALDDLinidhKDETLTYRVPLEHLDRLNQFAATYFMLHRCLTTLNEHYQKTVYLIEVEHKRYQCVICKI 313
                  69************************888888888***9*********************************************************** PP

       FAP206  94 ketvksktavpteqVfPkFialsklWselqdelellsvlnnllesLepll...............eaqsklfpeevleslleevevktdeervnvsef 176
                   +t++++ta+++e +fP+F++ls++W +l+++l+++++ln+l+e++e+l+               +a++k++++ +++s++e++++ ++         
  NP_611498.1 314 DDTLSMRTAIDSELIFPHFVYLSQVWGNLNNYLNHIVELNKLREQVEALVvddlmtltkatiaelQALHKRIKKPKVCSFEERMDAVKEL-------- 403
                  *************************************************************************************99444........ PP

       FAP206 177 kevewlfPettanfdkl.pldynGfCaytlverdGLllPgnpsigvlkykdkyyaFsskeaaleFaedpdryiaavlekakknpeLiqLLeLhqqf 271
                          +t++nf+kl ++d+++fC ++++ ++GLl+P+++++++++++d++++F++ ++a+ ++ +++ +iaa+++++++n++L+ L++L++++
  NP_611498.1 404 --------QTDGNFCKLnKADIKEFCSLAMTITNGLLMPAQVTRKLCSNVDITFGFRDPRYARFAELRFEPFIAAFRKVVFNNANLALLFKLDDAL 491
                  ........5************************************************************************************975 PP



Or compare NP_611498.1 to CDD or PaperBLAST