NP_649471.3 has 488 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
7.2e-17 47.8 0.0 1.7e-15 43.3 0.0 2.8 2 NP_649471.3
Domain annotation for each sequence (and alignments):
>> NP_649471.3
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 43.3 0.0 1.7e-15 1.7e-15 3 139 .. 189 318 .. 188 325 .. 0.77
2 ? -0.6 0.0 0.049 0.049 137 166 .. 341 370 .. 338 376 .. 0.87
Alignments for each domain:
== domain 1 score: 43.3 bits; conditional E-value: 1.7e-15
UPF0020 3 yRvfngpapLketLAaalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeear.aelklygsDldrrvvqgareNaeka 99
R+f g++++ ++L+ + + a +++g+ +DP+ G+G++l+ aa g ++ + ++++++ r ++ ++d+ r N++++
NP_649471.3 189 HRKFIGNTSMDAQLSLLMANQAMVRNGDLVFDPFVGTGSLLVSAAKWGGYVLGADIDYMMVHARC------RpSRITQKVREKDE----SIRANLKQY 276
699************************************************94333222222333......22222222334444....4599***** PP
UPF0020 100 gvgdl.iefsqadaakLr.lkegevdvivtnpPYGerlgskk 139
g +d+ +++++ad+ + +++ ++d i+t+pPYG+r ++k
NP_649471.3 277 GCADRyMDVVVADFSNPVwHSRISFDCIITDPPYGIREATEK 318
99886368899998875556888*************977765 PP
== domain 2 score: -0.6 bits; conditional E-value: 0.049
UPF0020 137 skkalekLYseflrelkrvlrgggrlvllt 166
s+ +l++LY +l+ +r+l+ ggrlv +
NP_649471.3 341 SHYSLQSLYGDLLEFSARHLKLGGRLVCWI 370
677899*******************99765 PP
Or compare NP_649471.3 to CDD or PaperBLAST