NP_689968.1 has 248 amino acids
Query: DUF3456 [M=150]
Accession: PF11938.12
Description: TLR4 regulator and MIR-interacting MSAP
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
9.2e-48 148.6 0.5 9.2e-48 148.6 0.5 1.4 2 NP_689968.1
Domain annotation for each sequence (and alignments):
>> NP_689968.1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 148.6 0.5 9.2e-48 9.2e-48 1 146 [. 37 187 .. 37 196 .. 0.95
2 ? -3.6 0.5 0.74 0.74 80 80 .. 223 223 .. 204 240 .. 0.52
Alignments for each domain:
== domain 1 score: 148.6 bits; conditional E-value: 9.2e-48
DUF3456 1 kCeaCkaladeleealskvkpkkevdvggfrldkkgkrkkkkikyakSelrltelleevCekmldYnlhkekktskr.......tlkrlasr..kgvk 89
kCe+Ck+l +el+++ls++++++ev + g+ ld +gkr k++++y++Se+rl e+le++Ce++ldY++h+e+k+s r t+++l+ + kgvk
NP_689968.1 37 KCEVCKLLSTELQAELSRTGRSREVLELGQVLD-TGKR-KRHVPYSVSETRLEEALENLCERILDYSVHAERKGSLRyakgqsqTMATLKGLvqKGVK 132
8*******************************9.7886.9*****************************************9999999999999**** PP
DUF3456 90 velgikyelwdedsaevnkslkkaCerlvEeyEdeieelykkeqeeedlekkLCser 146
v+lgi+ elwde+s+ev + lkk+Ce+++Ee+Ed + ++y+++qe+ l+++LC+ +
NP_689968.1 133 VDLGIPLELWDEPSVEV-TYLKKQCETMLEEFEDIVGDWYFHHQEQ-PLQNFLCEGH 187
*****************.************************9999.*******988 PP
== domain 2 score: -3.6 bits; conditional E-value: 0.74
DUF3456 80 k 80
+
NP_689968.1 223 E 223
1 PP
Or compare NP_689968.1 to CDD or PaperBLAST