NP_872422.1 has 226 amino acids
Query: UPF0552 [M=224]
Accession: PF10574.13
Description: Arp2/3-interacting proteins Arpin
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.6e-116 373.5 0.0 1.8e-116 373.4 0.0 1.0 1 NP_872422.1
Domain annotation for each sequence (and alignments):
>> NP_872422.1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 373.4 0.0 1.8e-116 1.8e-116 1 224 [] 1 224 [. 1 224 [. 1.00
Alignments for each domain:
== domain 1 score: 373.4 bits; conditional E-value: 1.8e-116
UPF0552 1 msriYdntaLqnkpvkneklagvwdpsayqrGaGvllegklvdvsrhsitDakgkkeryyvlyikpsrihrrkfdakgkeiepnfsetkkvntGfLms 98
msriY++ aL+nk+v++ +l+g+wdp+a+q G+Gvlleg+l+dvsrhsi D++g+keryyvlyi+ps+ihrrkfdakg+eiepnfs+t+kvntGfLms
NP_872422.1 1 MSRIYHDGALRNKAVQSVRLPGAWDPAAHQGGNGVLLEGELIDVSRHSILDTHGRKERYYVLYIRPSHIHRRKFDAKGNEIEPNFSATRKVNTGFLMS 98
9************************************************************************************************* PP
UPF0552 99 sykveakgesDrlseeeLkklvnktellkvtekhtpeetlafwleeaeleklelekgdevrlktkGdsPfieslakldagtvtkcnfaGDekvGasWt 196
sykveakg++Drl+ e Lk lvnk ell++te+ tp++t+afw++e+e+e +ele g++vrlkt+Gd+Pf++slakl+agtvtkcnf+GD+k+GasWt
NP_872422.1 99 SYKVEAKGDTDRLTPEALKGLVNKPELLALTESLTPDHTVAFWMPESEMEVMELELGAGVRLKTRGDGPFLDSLAKLEAGTVTKCNFTGDGKTGASWT 196
************************************************************************************************** PP
UPF0552 197 dkimankskeeeaeetkeqGdgaeddeW 224
d+ima+k ++++a e +eqGdgaed+eW
NP_872422.1 197 DNIMAQKCSKGAAAEIREQGDGAEDEEW 224
**************************** PP
Or compare NP_872422.1 to CDD or PaperBLAST