NP_899099.2 has 2750 amino acids
Query: DUF4704 [M=486]
Accession: PF15787.11
Description: Neurobeachin/BDCP, DUF4704 alpha solenoid region
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
4.1e-37 114.1 0.2 5.4e-36 110.4 0.2 2.4 1 NP_899099.2
Domain annotation for each sequence (and alignments):
>> NP_899099.2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 110.4 0.2 5.4e-36 5.4e-36 18 443 .. 876 1300 .. 872 1318 .. 0.78
Alignments for each domain:
== domain 1 score: 110.4 bits; conditional E-value: 5.4e-36
DUF4704 18 vvthsiqsilesvGGiqvLfPLfsqld.qaeedeqlege...........................seadeklcatlleliaelleesetnqqqll 85
v t ++++ +++vGG+ vL+PL++++ q++e e + e + + + +a l ++ + l++++ nq+ l+
NP_899099.2 876 VETWDVKDVVNCVGGMGVLLPLLERVAvQPQEAEAGPCEthdlvgpeltsgrntqglllplgksseDRMERNAVAAFLLMLRNFLQNHTVNQESLV 971
77899*******************986255555555555789********************9987677778888999999*************** PP
DUF4704 86 rlkGflvlsflLqsvspkhLtlevlsalksllkvlkslanselLlkdlvdsillnpklWiytdyeVQkeLysyLatdfvsdkkiltnlrrvstVlr 181
+++G+++++ lL +v+++ + ++vl + + l+++ ++ +Ll l +++l+n++lW +d++V +y+++++ ++ ++lr+ +V+
NP_899099.2 972 QCQGPAIIGALLRKVPSSAMDMNVLMSAQLLMEQAAA-DGGGPLLYLLYQHLLFNFHLWTLSDFAVRLGHIQYMSSMVREHR---QKLRKKYGVQF 1063
******************************9999955.369*************************************9997...99********* PP
DUF4704 182 lldilkqfYwvenaksksgvtskslleeRp.sqeeilklrallLslieqlvrksseisesevkalinyletvqddenvedvLelvirllseks..a 274
lld+l+ Y + eRp + +++ ++ lL l+++ ++++ s +++++++n+l+ + dd +v Lel+++ll ++
NP_899099.2 1064 LLDALRTHYSPQ--------------RERPlAADDLRTVQTSLLGLVREFLVRN--FSVEDMQVVLNFLAATGDDGQVVGTLELLLTLLQGSPvqD 1143
*********965..............367867899*******************..************************************9967 PP
DUF4704 275 sflealdskggieiflkLLsreseaiRl..laLkllgklllrspv.krksevmeaknlfs.liserLllfseeltdktynvLfevllekaspkivl 366
++ l + g +e++l LL r++ l k+l +l + + +r+++ ++ ++ + + +L+ +s ++ ++++ L++++++ + p++v
NP_899099.2 1144 PLAAFLLELGNLEVLLALLVRPKSTPLLtdRVCKILRRLQQNERLpERNRQRIRLHDCGLqGLVASLSEES--ISPQLCQGLYKLFVGTV-PQVVS 1236
78888889999********9987652221123455555554433223444444444433335555666666..66666666666666543.22221 PP
DUF4704 367 ekhsepekssklelPqilkviakllsqskdsesielrkkiLsdllvLlksnrenrrallqmsvWqewLvalaklaei 443
+ +l +l v+ l+ d +++r +i +l L+ +++ +r l +++Wq+ L+ l l+ +
NP_899099.2 1237 P------DCLNLS--DLLAVVQLSLQ--AD---LSVRLDICRQLFYLIYGQPDVVRLLARQAGWQDVLTRLYVLEAA 1300
1......111222..23333322222..22...45677777777777777777777777777777777776666555 PP
Or compare NP_899099.2 to CDD or PaperBLAST