PaperBLAST – Find papers about a protein or its homologs

 

Align NP_956626.1 to PF05527 (DUF758)

NP_956626.1 has 186 amino acids

Query:       DUF758  [M=181]
Accession:   PF05527.15
Description: Domain of unknown function (DUF758)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.3e-88  280.9   5.5    2.6e-88  280.8   5.5    1.0  1  NP_956626.1  


Domain annotation for each sequence (and alignments):
>> NP_956626.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  280.8   5.5   2.6e-88   2.6e-88       1     181 []       4     184 ..       4     184 .. 0.99

  Alignments for each domain:
  == domain 1  score: 280.8 bits;  conditional E-value: 2.6e-88
       DUF758   1 fsskslalraqKkllskmasksvaklfiddtsselldelyrlakeytknkkeaeklvKnliKivvKvgvllrnkqfsaeelalaekfrkklrqlamta 98 
                  fs+k+lal+aqKkl+skma+k+va+lfiddtsse+ldelyr++keyt+n+kea+k++KnliK+vvK+gvl+rn+qf++eelal+e+frkk+++lamta
  NP_956626.1   4 FSTKNLALQAQKKLMSKMATKTVANLFIDDTSSEVLDELYRVTKEYTRNRKEAQKIIKNLIKMVVKLGVLYRNGQFNNEELALVERFRKKVHTLAMTA 101
                  899*********************************************************************************************** PP

       DUF758  99 isfyevdftfdkavLakllkecrdlllqlverhLtdkslgrikhvfdffanpefLeklfkpdeeyrehlkkivddlnklleeg 181
                  +sfy++dftfd++v+++ll++cr+ll+q+++rhLt+ks++ri+hvf++fa+ +fL++l+ p+e yr hl+ki++++nk+l+eg
  NP_956626.1 102 VSFYQIDFTFDRRVMSNLLNDCRELLHQAINRHLTAKSHARINHVFNHFADCDFLATLYGPSEVYRGHLQKICEGVNKMLDEG 184
                  *********************************************************************************96 PP



Or compare NP_956626.1 to CDD or PaperBLAST