PaperBLAST – Find papers about a protein or its homologs

 

Align P40046 to PF02656 (DUF202)

P40046 has 129 amino acids

Query:       DUF202  [M=68]
Accession:   PF02656.20
Description: Domain of unknown function (DUF202)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.6e-22   63.9   3.6    4.3e-21   61.5   3.3    1.9  2  P40046    


Domain annotation for each sequence (and alignments):
>> P40046  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.5   3.3   4.3e-21   4.3e-21       1      67 [.      24      85 ..      24      86 .. 0.94
   2 ?    0.7   0.0     0.042     0.042      42      60 ..     102     120 ..      88     127 .. 0.66

  Alignments for each domain:
  == domain 1  score: 61.5 bits;  conditional E-value: 4.3e-21
            CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  DUF202  1 rdglAnERTfLaWlRtslalialgvallrffleggptalalllglilivlgiltlllalrrylrrer 67
            ++++AnERTfL+Wl ++++l++lgv+ll+f   g++ +  ++ + +++++++ t+++al++y++r+ 
  P40046 24 KVFFANERTFLSWLNFTVMLGGLGVGLLNF---GDKIG--RVSAGLFTFVAMGTMIYALVTYHWRAA 85
            689**************************6...77777..999*********************986 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.042
             HHHHHHHHHHHHHHHHHHH CS
  DUF202  42 llglilivlgiltlllalr 60 
              l ++++++++++ ++ + 
  P40046 102 TLLCFFLLVAVIINFILRL 120
             4445666666666655555 PP



Or compare P40046 to CDD or PaperBLAST